Pomacea canaliculata (golden apple snail): 112556452
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Entry
112556452 CDS
T05881
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112556452
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pcan00536
]
112556452
Glycosaminoglycan binding proteins [BR:
pcan00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112556452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
112556452
NCBI-ProteinID:
XP_025081261
LinkDB
All DBs
Position
LG2:complement(11405530..11428937)
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AA seq
1399 aa
AA seq
DB search
MLKASCIGAFLVLCVLARADGQEKECYDKVLASYVPAGLVYFPYDDDPCYQCECVDGGEP
ICFQKQCEAIDKCPDGSDPYIAPGECCEACPDGAVVKKKEDDINEVSRGEDGRSESRVSD
VQNQQAGGKAAPVYPGTPGIFQSGPPGPRGPPGPPGPAGQPGFQGSRGEPGDPGPPGSPG
QRGFPGSPGPQGQDGDEGVPGDPGPPGPIGPSGANGNPGVSGMPGPKGHRGFPGRPGKDG
EAGRQGEKGPGGPPGPAGGVGPAGARGAPGERGRDGSPGTPGARGNDGAPGNSGPSGATG
PPGPPGFPGAPGSKGDRGNPGESGALGPPGPAGSDGSPGAPGPVGQPGIRGEDGASGSKG
STGPVGASGSPGFPGPVGPPGSAGQAGPPGAKGADGRDGINGAPGDPGPQGSPGNPGERG
LPGLPGLEGKRGPAGSQGPPGPAGSQGESGAPGTPGLAGRPGLPGPPGQDGSRGAPGERG
TAGAQGNPGQQGPPGPTGPRGSTGAAGQPGSAGEAGPPGNNGLDGAPGEQGPQGQQGPSG
LQGPPGPRGEVGSEGRPGAPGNTGPPGPRGERGPSGQPGPPGPSGSPGAQGESGPQGVPG
EAGFQGLAGPPGLPGENGRTGPAGSTGPAGEPGIPGARGEQGFPGEQGQQGQRGPPGERG
PSGPAGETGQPGPPGPAGSRGDPGPAGNVGLSGERGVPGRAGARGAPGPQGESGRDGEAG
PPGEAGQPGPPGVPGPSGQVANKGDRGTPGPPGEAGPPGSAGRPGPPGASGPQGVQGIAG
TPGEAGASGEAGPPGARGDPGARGYPGEQGPAGEPGIPGSDGSKGETGEQGPAGAAGQPG
QPGPPGAPGLSGPPGPAGQNGPQGRPGERGSSGETGPPGIGGEAGNPGLPGSDGAPGDRG
QPGQPGPPGPSGVTGPQGERGAPGFPGAAGEAGPPGAVGDPGEAGERGQDGKDGPTGPVG
PPGAPGPAGYPGESGQPGERGQDGSPGLPGRAGSKGARGNPGPPGPPGISGPVGAPGNAG
GPGPAGERGERGERGSPGSAGPVGPAGPAGAQGAQGEQGRRGSSGAKGDKGWPGLPGPIG
PPGPAGGNGETGPSGPPGPPGPAGSSGARGSPGRNGEPGPQGRPGPAGPRGPSGEDGPSG
QRGPPGPPGPPGPPGYAPVYPGQPSWGQSKGPDPYQYDQPIDTVEAYEGLNFAREALTRL
RRPTGKATTPGQSCKDIKAANPDFKSGEYWIDPNEGSAVDAILVYCRMESMETCIRPSPT
FFPNQRWTTDTRAGQYFMDDVNKNKEFFYKTDFSQLKFLQMYSDGARQRVTYHCLNSQAY
GTRLTAYTGDELDTVEGRFKRTTFIDVNDDCVQDNQWHSAIYDVRTNKTDILPITDILLF
DIGRQNQQFGLELGEVCFS
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaggcatcgtgcatcggcgccttcttggtgctttgtgtcctcgccagggccgac
gggcaagaaaaagagtgctacgataaggtcttggctagttatgtgcctgctggcctggtg
tactttccctacgacgatgacccttgctaccagtgcgagtgcgttgacggaggagagccc
atatgctttcagaagcaatgcgaagcgatagacaagtgcccggatggatcggatccttat
attgccccgggcgaatgttgcgaggcgtgtccagacggcgctgtcgtcaaaaagaaagaa
gacgacatcaacgaggtttctcggggtgaggatggtcgttctgaatcaagggtatctgac
gtccaaaaccaacaagcgggtggaaaggctgctccagtctaccctggtacccccggaatc
ttccagtctggaccccctggacctcgaggaccacctggcccacccggtccagctggtcaa
cctggtttccaaggctctcgtggtgaacccggtgaccccggtccacctggttcccctggt
caacgtggattccccggaagtcccggtcctcaaggccaagacggagacgaaggtgtaccc
ggagaccccggtccacccggacctatcggaccaagtggcgccaatggaaaccctggtgtt
tctggaatgcccggacccaaaggacatcgtggattccccggaagacctggcaaagatggt
gaagctggccgtcaaggagagaagggacctggtggaccccctggccccgctggaggagtt
ggccctgcaggcgctcgtggtgcccctggtgagagaggtcgcgatggatcacctggtaca
cccggagctcgtggtaacgacggcgcacctggaaactctggtccatccggcgcaactgga
ccacccggacctcctggtttccctggtgcacctggttccaagggagatcgcggtaaccct
ggagagagcggtgctctaggtccacccggcccagcaggctccgatggttctcctggtgcc
cccggccctgtgggacagcctggtattcgcggagaggacggagcttccggatctaaggga
tcaactggacctgttggtgcttctggctcacccggtttcccaggacccgttggtccaccc
ggatctgctggtcaggctggcccacccggagcaaaaggagctgacggtcgcgatggaatc
aatggtgcaccaggtgacccaggtccccagggtagcccaggcaacccaggagagagagga
cttcccggtctgccaggattggagggcaagcgtggtccagccggaagccaaggcccaccc
ggtcctgctggctctcaaggagaatccggagcaccaggaaccccaggtctggcaggacgt
cccggccttccaggtccccccggccaagatggttctcgtggagcccctggtgaacgcgga
actgctggagcccaaggaaacccaggacaacaaggacccccaggaccaactggaccacga
ggttcaacaggcgccgctggacagcccggtagtgcaggtgaagctggtcctccgggtaac
aacggcttagatggagcacctggcgagcaaggtccacaaggacaacagggaccttctggt
ctccagggcccacctggaccacgtggtgaagtcggatctgaaggacgccctggagcacca
ggcaacactggcccacctggcccacgtggtgagcgaggaccctctggccaaccaggcccc
cctggcccatctggcagtcctggagctcaaggtgaaagcggaccccaaggtgttcccggt
gaggcaggtttccagggtttggcaggcccacctggacttcctggtgagaacggccgtact
ggacctgctggatccacaggtccagccggagaaccaggcattcctggcgcaagaggagag
caaggcttccctggcgagcaaggacaacagggacagcgaggcccacctggcgagagagga
ccctctggacctgcaggcgagaccggacaacctggacccccaggcccagcaggatctcgt
ggtgaccccggcccggctggcaatgttggtctgtctggagagcgaggtgttcctggacgt
gcaggagctcgcggagcaccgggaccccaaggagaatctggacgtgatggcgaagcagga
cccccaggtgaggctggtcagcctggacctccaggtgtcccaggcccctctggacaagtt
gccaacaagggagaccgaggcacacctggaccaccaggtgaggctggacctcccggatct
gctggtcgccctggaccaccaggtgcttcaggacctcaaggtgttcaaggaattgctgga
actcctggagaagcaggtgcatcaggagaagctggacccccaggagccagaggtgaccca
ggagcacgtggatacccaggagaacaaggacccgctggcgagcctggaatcccaggcagt
gacggatccaagggagagactggcgaacagggccctgctggtgctgctggacaacctggt
cagccaggtccccccggcgctcctggactctctggtccccctggacctgctggacaaaat
ggacctcaaggcagacccggcgagcgaggatcttctggtgagactggacctccaggcatc
ggtggtgaagctggaaaccctggtctgcctggcagtgatggtgctcctggtgatcgaggc
caacccggacaacccggaccacctggaccttcaggcgtaaccggaccccaaggtgagcgc
ggtgcccctggattccctggcgctgctggcgaggctggaccccccggagctgttggtgac
cccggtgaggcaggtgaacgtggtcaggacggcaaagacggacctactggacctgtcggc
ccacctggtgcacctggacctgctggctaccctggcgagagtggacaacctggcgagcgt
ggacaagatggaagccctggactccccggtcgtgctggttccaaaggtgcccgtggcaat
cccggcccacctggcccacctggaatttccggacctgtgggcgcccctggtaatgctgga
ggccctggacctgctggagagcgaggcgagaggggtgagcgtggatctcctggaagcgct
ggacctgttggacccgctggaccagctggcgcacaaggtgctcaaggagaacaaggacga
cgtggatcttccggtgctaagggtgacaaaggatggcctggacttcctggacccattgga
cctcctggacctgctggtggaaacggtgagacaggaccatccggacctcctggtcctcct
ggaccagctggatcctctggagcacgtggttcacctggacgcaatggcgagcctggacct
cagggacgacccggcccagcgggacctcgtggaccttctggtgaagatggaccttctgga
caacgtggcccaccaggcccacctggaccacccggaccacctggttatgctcccgtctat
cctggtcaaccaagctggggccagtccaagggccctgacccataccaatacgaccagcct
attgacactgttgaagcatacgaaggtctgaactttgcccgcgaggccctgacacgtctt
cgcagaccaactggcaaggcaactactcctggacaatcatgcaaggacatcaaggcagcc
aaccccgacttcaagagcggcgaatactggatcgatcctaacgagggctctgcagtggat
gccatcttggtttactgtcgtatggagtccatggagacctgcatcagacccagcccaacc
ttcttccccaaccagaggtggacaacggatacccgtgctggtcaatacttcatggatgac
gtcaacaagaacaaagagttcttctacaagactgacttcagccagctcaagttcctgcag
atgtattctgacggagcccgtcagcgcgtgacctaccactgcctcaacagccaggcctac
ggcacccgcctcaccgcctacaccggcgacgagctggacactgtggagggccgcttcaag
aggaccaccttcatcgacgtcaacgatgactgcgtccaagacaaccaatggcacagcgcc
atctacgatgtccgcaccaacaagacagacatcctgccaatcacagatattcttctcttt
gacatcggccgtcagaaccaacaattcggacttgagttaggagaagtgtgcttcagttga
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integrated database retrieval system
