Pomacea canaliculata (golden apple snail): 112559962
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Entry
112559962 CDS
T05881
Name
(RefSeq) transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
112559962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcan03021
]
112559962
03019 Messenger RNA biogenesis [BR:
pcan03019
]
112559962
Transcription machinery [BR:
pcan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
112559962
RNA polymerase I system
112559962
Messenger RNA biogenesis [BR:
pcan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
112559962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW6_SPT5
KOW5_SPT5
Spt5-NGN
KOWx_SPT5
KOW2_Spt5
KOW7_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Arabino_trans_N
DUF5847
Motif
Other DBs
NCBI-GeneID:
112559962
NCBI-ProteinID:
XP_025087267
LinkDB
All DBs
Position
LG3:complement(10983793..11002391)
Genome browser
AA seq
1062 aa
AA seq
DB search
MSDSEDSPFSDAESEGGDQNESKNDGSDAGQEGSDAEDKPGDDDNEVDEEGGDDDEDEED
YDDEDEEEGIGRPKKKKRRGALGFIIDEADVDEEDEDDEEWEEGAEELIDRKSTYEGPSA
KEIESHQRLNQILESQDEDEIEAYYRQRYGDSTAMDRFGDGEEMSDEITQQGRLPGVKDP
NLWVVKCRMGEEKAVVVHLMRKMIAFQNTDEPLQIKSVVAKEGLKGYIYIEAYKQIHVKQ
AIEGIGNLRVGCYNQQMVPIREMTDVLKVVKETANLKPKTWVRLKRGIFRDDLAQVDYVE
PSQNVVHLKMIPRIDYTQPRGILRSSANQDQGKKRKRRPPQKLLDVDAVRSIGGEVSTDG
DFVIFEGNRYNRKGFLFKSFAMSAIVSEGIKPTLVELEKFEEQPEGIDVELAPEKASGEI
VHNLAPGDVVEVAEGELINLQGKVIKVDGNKITFLPNHKDLKNPLEFPANELRKFFKMGD
HVKVIRGRYEGDTGLIVRVEEKMIVLFSDLTMHELKVLPKDIQLCTDMATGVDSLGQFQF
GDLVQLDPQTVGVIVRLEKENFQVLNMHNKVVSVKPQSITRKKDTRHAVALDSENNNIQV
KDVVKVIDGPHSGRQGEIMHLYRSFAFLMSRMMTENGGYFVCRTRHLVLAGSSRQNLAAP
MGGMAPMSPRLSSPAHPSSGGGGGGGGGGGAGSAGRGRGGMTRRDRELIGQTVRIKQGPF
KGYIGIVKDATEDTARVELHSSCKTISVDKSRLLTLTGPRAGTATSTYGGRTPVYGGQTP
MYGSRTPMYGSQTPLHDGSRTPHYGGQTPLHDAGSRTPSGGNSAWDPSSANTPSRNNDFD
YPYEEASPTDYATTPNPATPGYQADAPSPVGPYTPQTPGSTYSPYHPTTTSPATFQANSP
GYVGTPSPAGYQPSPSPGGYAGTPSPAGIGFSPMTPGAPFTPQTPGTAMDHNLSDWHTTD
ILVKVKETHDDPDLIYQTGVIRSISGGMCSVYIMENDKVVNIACEHLEPVAPTKHEKAKV
ILGDERETVGTVLSIDGCDAVFKIDEKNIRMLPVKHLCRMQS
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacagtgaagacagtcccttttcagatgctgaaagtgagggtggagatcagaat
gaatcaaaaaatgatggcagtgatgctggacaagaaggaagtgatgcagaagataaacca
ggtgatgatgacaatgaagtagatgaggaaggaggggatgatgatgaggacgaagaggac
tacgatgatgaagacgaagaagagggaattggtcgtcctaagaaaaaaaagaggcgggga
gccttgggttttatcatagatgaagctgatgtggatgaagaagacgaagatgatgaggag
tgggaggaaggtgctgaagaacttattgacagaaagtcaacatacgagggtccaagtgct
aaggaaattgagagtcatcagcgccttaatcagattttagaaagtcaagatgaggatgag
attgaagcgtattatcgtcaaagatatggagattcaacagcaatggatcgctttggtgat
ggggaggaaatgtcagatgaaatcacacaacaaggacgattacctggtgtgaaggatcca
aatttatgggttgtcaagtgcagaatgggagaagagaaggctgttgtggtccatcttatg
cggaaaatgattgcgtttcagaacactgatgagcctctgcagattaaatcagtagtggcc
aaggagggattaaaaggatatatatacattgaagcatacaagcagattcatgtgaagcag
gctattgaaggcattggtaaccttcgagttggatgttataatcagcagatggttcctatc
agagaaatgactgatgtgcttaaggttgtgaaggaaacagccaaccttaagccaaaaaca
tgggttcggcttaagcgggggatcttcagagatgatcttgctcaggtggattatgtggag
ccatcacagaatgttgttcatttgaagatgatacctcgcattgactacactcagccaagg
ggtatccttcgctcttcagcaaatcaggatcaggggaagaagaggaaaagaagacctccc
cagaaattactagatgtggatgctgtgagatcgattggaggagaagtcagtacagatggt
gattttgttatcttcgaaggaaaccgctataaccgcaagggatttttgttcaaaagcttt
gccatgtcagcaattgtgtctgaagggatcaagcctactctggttgagctggagaagttt
gaggaacagcctgagggtattgatgtggaattggctccagagaaagccagtggggagata
gtccacaatctagctccaggtgatgtagtggaagttgcagagggtgagttgataaatctg
cagggtaaagtcatcaaggttgatgggaacaagatcacctttctacccaaccacaaagat
ctcaagaaccctctggagtttcctgcaaatgaattgcgtaagtttttcaaaatgggtgat
cacgtgaaagtgattcgaggtcgttacgaaggagacactgggctgatagtaagagtggag
gagaagatgattgtgctgttctcagacctaacaatgcatgagcttaaagttttgccaaaa
gatattcagctatgcacagacatggctacaggtgtggattcccttggacagttccagttt
ggtgatcttgtccaacttgatccacagactgtaggtgttatagttcgactagaaaaggag
aacttccaagtccttaacatgcacaacaaggttgtgtctgtcaaaccacaaagcatcaca
agaaagaaagacacaaggcatgctgttgcccttgactcagaaaacaataacatccaagtg
aaggatgtcgttaaagtcatagatggaccacattctggtcgtcaaggagagataatgcat
ttgtatcgtagctttgctttccttatgtcacgaatgatgactgaaaacggaggttacttt
gtatgtcgtaccagacatctcgtgttggcaggcagttcacggcaaaaccttgctgcccct
atgggaggcatggcgcctatgtcaccacgtctttctagccctgctcacccaagtagtggt
ggtggtggtggtggaggtggcggcggaggagctggttcagctggccgtggccgaggagga
atgactcgacgtgatcgagaactgattggtcagacagtccgcatcaagcaagggcccttc
aagggttacattggtattgtcaaagatgctacagaagacacagctagagtggaactacac
tcttcctgtaaaactatctctgtagacaagtctcgactgttgactctcactgggccacga
gcaggaacagcaacatctacctatggtggccgtacacctgtctatggtggccagactcct
atgtatggatctcgcacaccaatgtatggttcacagacaccactgcatgatggaagccgc
actccgcactatggaggacagactcctctacatgatgcaggcagcagaacacccagtggt
ggcaacagtgcctgggatccatcaagcgcaaacaccccttctcggaataatgactttgat
tacccgtacgaagaggcatcaccaacagattatgccactacaccgaaccctgccacccca
gggtatcaggcagatgctcctagtcctgtgggaccctatacccctcagacacctggcagc
acatactctccctaccaccctaccaccacctctcctgcgactttccaagccaacagtcct
ggttatgtggggacccctagccctgctggctaccagccaagtcctagtccaggtggctat
gctggcactccgtctcctgcagggattggctttagccctatgacccctggagcacccttc
acacctcagaccccaggcacagccatggatcacaacctgtctgactggcacacaacagat
attctggtcaaagtcaaggagacacacgatgacccagatctgatttaccagacaggtgtc
ataagaagcatttcgggaggcatgtgttctgtgtacataatggagaatgacaaagtcgtt
aatattgcctgtgaacacctggagcctgttgccccaacaaaacatgaaaaggcaaaagtt
atacttggagatgaaagggaaactgttgggactgttctcagcatcgatgggtgtgacgca
gtgttcaaaatcgatgaaaaaaacattcgtatgctgccagtcaaacatctgtgcaggatg
cagtcctaa
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integrated database retrieval system
