Pomacea canaliculata (golden apple snail): 112560237
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Entry
112560237 CDS
T05881
Name
(RefSeq) general transcription factor IIH subunit 1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan03022
Basal transcription factors
pcan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112560237
09124 Replication and repair
03420 Nucleotide excision repair
112560237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcan03021
]
112560237
03400 DNA repair and recombination proteins [BR:
pcan03400
]
112560237
Transcription machinery [BR:
pcan03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112560237
DNA repair and recombination proteins [BR:
pcan03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112560237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
112560237
NCBI-ProteinID:
XP_025087708
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Position
LG3:15935307..15947386
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AA seq
581 aa
AA seq
DB search
MSKSSEEVLLVIKHVRYKKTEGTLYMMGERMAWMLESKNVFSVSHLYADIKVQKISPDSK
DKVQLQVVMHDGGASTFQFANPKGRTAQQEDRESVKELLQQLLPQFRRKVSSELEVKNKL
LQEDPELFQLYKDLVVSQVITAEEFWASKAHKFGSSNKNDVKQNIGVSPAFLADIKPQTD
GANGLKYNLTADIIESIFKTYPMVKKKHAECVPHSLSESEFWTRFFQSHYFHRDRVAITN
KDIFSECAKHDEEEIKQEISQKVTNPLVDLTEIKDAAVDEDYRGITEDNRVSTNIMNQSL
IRRFNHHSTMVLRTCQSELPAKSSENGMANEVEIAKGSILKESVTENGRIPKRTIGVSEK
EPVLKKTHYQSVVELEDLGRERAVPAVSLRLDRMERYLHGPTPASASRYTSTEDAMAALH
NITEQISSWRDSLTAVSAHHSLGVLGELSPGGALMHGTTQQQLQHMVSKEMQKELKHNYS
ALCELLRHFWSCFPTTTKFLEDKVVKMRTTLERFQSAKLFPLKEQLSHHHLSVDGTWKKC
YLVPSISLISGRLVACLVRPERCYVLALVFTVKHSFDFLHI
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagtcatcagaagaggtcttgcttgtcattaagcatgttcgctataagaagact
gagggtactctgtatatgatgggagaacggatggcatggatgttggagtcaaaaaatgtt
ttcagcgtcagtcatctttatgcagatattaaagtccagaagatctcccctgacagcaaa
gacaaggtgcagttgcaggtcgttatgcatgatggaggtgcaagcacctttcagtttgcc
aatcccaagggccgtacagcacagcaagaggatagagaatctgtaaaggagctgctacag
caactgctgccacagttcaggcgcaaagtgtccagtgagctagaagtcaaaaacaagctt
ctgcaagaagatcctgaactgttccagctgtacaaagacttggtggtgtcacaagttatc
actgctgaagaattctgggctagcaaagctcataagtttggaagctcaaacaaaaatgat
gtaaagcagaacattggtgtatcaccagcattcttggctgacataaaaccccaaacagat
ggtgccaacggactgaagtacaacctcactgctgacatcatagagtcaatattcaagaca
tatcccatggtcaaaaagaagcatgcagaatgtgtcccccattcgctatcagagagtgag
ttctggacaaggttcttccagtcacattattttcatcgtgaccgtgtcgctatcaccaac
aaggacatattctcagaatgtgccaagcatgatgaagaagagatcaagcaagaaatcagc
cagaaggtgaccaacccactagttgatttgacagagatcaaagatgctgcagttgatgaa
gattacagaggcattacagaagacaaccgtgtcagcacaaacattatgaaccagtctttg
attcgacggtttaaccatcactccacaatggtcttgcggacatgtcagagtgagcttcca
gcaaaatcaagtgaaaatggaatggctaatgaagtggagattgcaaaaggctccattttg
aaagagtctgtcactgaaaatggtcgtattcctaaaaggactattggcgttagtgaaaaa
gaacctgtgctgaagaagacacattatcagtctgtagtggagttagaagacttgggaagg
gagagagccgttccagcagtaagtctacgattggacagaatggagcgctacctgcatggt
cctactcctgcttctgcctcacgctataccagtactgaagatgccatggcagcattacac
aacatcacagagcagatttcttcctggagagacagcttaacagctgtttctgcacaccac
tcactaggtgtgttaggagagctctcgcctggtggggctctcatgcatggaacaacacag
cagcaattgcagcacatggtgtctaaagagatgcagaaagaactgaagcataattacagc
gccctctgtgaacttcttagacacttttggtcttgttttcctactaccactaaattttta
gaggacaaggtagttaaaatgagaacaacattggagaggttccagtcagccaagctcttt
ccacttaaagagcaactgagccatcaccatctaagtgttgatggcacatggaagaaatgt
tatctggtgccttcaataagtttgatcagtggcaggctcgtcgcatgtctcgtaagacct
gaaagatgctacgtactagcgctagttttcacagtgaagcatagctttgactttctccac
atctga
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