Pomacea canaliculata (golden apple snail): 112560885
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Entry
112560885 CDS
T05881
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC112560885
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112560885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcan03021
]
112560885
03019 Messenger RNA biogenesis [BR:
pcan03019
]
112560885
Transcription machinery [BR:
pcan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112560885
Messenger RNA biogenesis [BR:
pcan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112560885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_PCFS4
Pcf11_C
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
112560885
NCBI-ProteinID:
XP_025088780
LinkDB
All DBs
Position
LG3:36070808..36087815
Genome browser
AA seq
2294 aa
AA seq
DB search
MTDSAESYRAALADLTFNSKPMINMLTMLAEENEQTATQIVQVIEEEIEKAPAQRKLPIL
YLIDSMIKNLSSTLYPQLFIQNIVTLFCRVFEEVDEKTRTAMYKLRQTWVKCIPNNKLFA
LDVRVKRIDPAWPITAKPPEQGSIHVNPKFLVSQAKQAQAGSGENSPTWSSSPQSEATLP
DRSPDDKMKELQEKEEELKRLKLELELAQTRAKLEQEKRKYEQKVEEEEARLRATQDFMS
VDGPGSTPPDFSSGPLPRTTGASQSSSASARSRDPRLARNPDLASSVASRDPRRRNQGPT
SQQQLTPTSQAQPSIISNQVPPPTSMQQQLLPQTLTLAGAGLQPIPPVPAIPVVPAPVGE
DLAALADWFTSAGNTHVVTTAPVTEPRPVHAEPKTPNLSNKPSNKDSLLSTIPLPNNAQS
SATSKQGKQVKKPAKPKIIPDKAVPEKTPAPVKFKINTSEVPSTPPPLKLQPPAVKKKVV
PKTDAKGSLDEDSGLTSAKLKKSETNPEVKKTDKTVEEISEKEDKPVEKESSKERKVEKK
SDRETDSSEKSPRKTDKTSSISREKKSTSSRRSLSTERRDHERRDSKDSDRARSGEDRSH
GSKERHVAKERERRGREEKTDHRKSPPHRSSFRGRVSRGRGRGRSYHYHSRSRSVSRSRS
RSPIKGDKRKSIDQNSCITTSSSGSDVASSKGTVSAASSQEKIIDVDDRAAAKRSLDSDD
NLAPQPKKARAVSGDNSTTDVSVGESDSKEDIEKLFSGQDIDYRQQGGSLMQSPAQQRWS
KFKENHPEDFTLELERRKSMDEVRRASLEAAGVSGPRHRDFDRDLHDVDFRRRSILQPGL
TRRPLVRADIKESIPQALSLEHQEEIMMQAEQELRAGRMSHEEHQNLLRQLGQVFDIQRQ
QRKTSDRGDADWNDPSRHGDPHLRDHKLASRKEIQDDVDHRRLFDSDFRKSGSDRPQDSV
HESHADRDFRASRAEEGDVDLRRSGRREEAAPYGSPRADFDARDSPRSDFDGRRDLVKIM
ILAERVPSEIIDLVLGLILLEETVQETLKAGKVQENMVGAHMQTLRICLMVSPGVKDLLG
IAPGVPVDSHHVKSDERGPATDYDKRDLHRRVPRRPDFEGNRPSRPDFRHGPDRNADYDY
DARGMPRDFDYRGPLRDYEGRVHTRDFDHRSPRDFDGRGPPREFDDRNLPRDHEGRMGPV
DSFPLNRSERVPHGEIREPYHPGFEAGPFNGPRPSFLGAGPRPLRPRVPVQGPSGPRGLA
PHMHQDSLARFPDDAPIPSSPMDDPRWSVMRGLLGNEVKEEIVIDGKPFEVRMGVERRIK
IYNVVYDVLIDPLDRGIRVNGELVYKFGEPKKDISLGGKVVEIFYHGPHRDIWIDGQQYR
LRIDAPPLNMVFDNTIYGFQIDGRDNMILVDRLEKGTLGGPPRPLILNGVHHEISFEPPP
RRILIDNQSCELKLDRKIPVIMYNKKPHGIRFEGDPRNIYINDVPYLVPFDRAVKVKIGP
RPHFLAFGGPAHEVIIDGRWYEVKFNNNPKNITIGNRICSVRLEPPVPRVKILSEMTEAY
DESALLKSNRPSPFARTPQQLSPKADLRHPHPVDSVTIGVRQRIDADVTAKPIVEPGSIG
QNQPGAGISTPVVGVLPEKSPLPVCTSQAVAVAQDVSSGKPPAPVAETTTVNQSPKPVVS
MQQGTEALHLQGMGMRPPHQQSVRFQGTGCPVGQGPMQGPRPGPGAMLQAQNLMGNSMLL
ANMMQGLPMMPVTMPQILGLPEALMGIQRMMSPQMGGNPFAQPMTSPPFIGNPTLPRMIS
PSPGPFATTGPQIGPISIHQSMVTQSSTPQTLVTSATPLTPAAGPAASPAAPAAGASMLD
VKDLFEKLVAVGIIKKEEKKEETTVSLEVAKPKEALAEIQQEMVEQKPLVPAVKPKIVIP
KKEPAFEHPPDLSDFQSVKLKKQYSEVVHLLYQGIQCSSCGCRFPMSETEKYRQHLDWHF
RANKREKEAAKIASYRKWYYEMNEWILYEELEESEEKLRSSVFEEEASAHSAENQASSFP
LQIPEGVEVIHNPTATGNEKEDICLICNDPFEQYWDEEAEDWHLRDAIKVDGKVYHPVCY
EDAKEGSGATVTPTPTVDVAVNPLETQLQHSASAGVAFEEVPAPTRVPEKWETNVKTEPL
PVEEAHVTAASSVTSADSLPEAKHEISDSSLPVKTDTATTAADTSHPVSSDIMLVPVVIK
TEPSSDNVTEPLTVPVKVEPTDSLIPEQTCAEATLNKAICNTSSPPTMSPSLEQVADVKE
PSAVEESASKDSEN
NT seq
6885 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacagcgccgaaagctacagagctgcactggcagacctgaccttcaacagtaaa
ccgatgatcaacatgctgacaatgttggccgaagaaaacgagcagacggcgacgcagatc
gtgcaagttatcgaagaagaaattgagaaggctccagcccagcggaaattgcctattttg
tatctgatagactccatgataaagaatctttcatcaacgctgtaccctcaactttttatc
cagaatatcgtcacgctgttttgtcgagtgtttgaagaggtggatgagaagaccagaaca
gctatgtacaaactacgacaaacttgggtgaaatgcatccccaacaacaagctttttgcc
ttggatgtgcgagtgaaacgaatagaccctgcttggcccatcacagcaaaaccaccagaa
caagggagcatccatgtcaaccctaaatttttagtgagtcaggcgaaacaagcacaagca
ggttcaggtgagaacagtccaacttggtcgagttctcctcagtctgaggcaacattacct
gatcgctctcctgatgacaaaatgaaagagcttcaggaaaaggaagaagaacttaagaga
cttaaattggaattggagttggctcagaccagagcaaaattggagcaggaaaaacgaaag
tatgaacagaaagtggaggaagaggaagctcgtctgcgcgctactcaggatttcatgagt
gtagatggtccaggctcaacaccaccagacttttcttctggccctcttccccggaccact
ggagcatctcagtcttcatctgcatctgcacggtctagggatccacgtttggcccgaaat
ccagatcttgctagttctgtggccagtagagatcctaggcgacgtaatcaaggtccaaca
tcacagcaacagctaactcctacctcacaagcacaacctagcattatatctaatcaggta
ccaccacctacttctatgcagcagcagcttttgccacagacattgacactagctggtgct
ggtctacaaccaatacctcctgtacctgcaattcctgttgtccctgcaccagttggtgaa
gatcttgcagctttggctgattggtttacatcagcgggtaacacacatgtagtcaccaca
gctccagtaacagagcctcgacctgtgcatgctgagcccaaaactcctaatctgtcaaac
aagccctcaaacaaggactctttgcttagcacaattccacttccaaacaatgcacaatcc
tctgcaacatcaaagcagggtaagcaagtaaagaaaccagcaaaaccaaaaataattcca
gacaaggctgttccagaaaagacacctgcaccagttaaatttaaaattaacacatctgag
gtgcctagcacgccaccacctctaaaacttcagccacctgctgtgaaaaagaaggtagtg
ccaaagactgatgcaaaaggttctttagatgaagattctggtttgacaagtgcaaaactt
aaaaaaagcgaaacaaatccagaggtaaagaagactgataaaacggttgaagaaatatca
gaaaaggaggacaagcctgttgaaaaagagtcgagtaaagaaaggaaagtggagaaaaaa
tccgacagagaaacggatagcagtgagaaaagtcccagaaagactgacaaaacatctagc
atttctagagagaaaaaaagcaccagttctcgtaggtcactttcaacagagcgcagggat
cacgagcgtcgtgactcaaaggattctgatcgtgctcggtccggtgaagacagatcacat
ggcagcaaggaacgccatgttgctaaagaaagagagaggcgtggcagagaagaaaagact
gaccaccgcaaatccccccctcaccgctcctcatttcgtggacgagtttcaagaggtaga
ggcagaggtagaagttaccattatcattctcgatcaagatctgtttcacgatctcgttcc
cgatcacccatcaagggtgataagagaaaaagtattgatcagaattcatgtatcacaacg
tcttcctcaggcagtgatgttgcatctagcaagggcacagtctcagctgcttctagtcag
gaaaagattattgatgtcgatgaccgtgcagctgcaaagcggtctctagacagtgatgac
aacctagctccacaacccaagaaagcacgagctgtttctggagacaactccacaacagat
gtttctgttggggaatctgactccaaagaagacatagaaaaactgttcagcggccaagat
atcgactacagacagcaaggaggttcattgatgcagagtccagctcaacagcgctggtcc
aaattcaaagagaaccatccagaagattttaccctagaacttgagcgacgtaaatcaatg
gatgaagtgaggcgtgcatctttagaggcagcaggagttagtggacctcgtcatcgtgat
tttgatcgtgatcttcatgatgtggacttcaggagaagaagtattctacaacctggtttg
acacgtcgtccattagtaagagcagatataaaggagtcaatcccacaggcactttcttta
gaacatcaagaagagataatgatgcaggctgagcaagaactccgtgcaggacgcatgtct
catgaggagcaccaaaatctccttcggcagcttggtcaagttttcgacattcagcgtcag
cagcgtaaaacctctgatcgtggagatgcagactggaatgatccttccagacatggtgat
cctcacctgagagatcataagttagcctcaagaaaagaaatacaagatgatgttgatcac
aggagattgtttgacagcgattttcgtaagagtggttctgatagaccacaggactcagtt
catgaaagccatgcagacagagacttcagggcatcacgagcagaggaaggagatgttgat
cttcgcagatctggtagaagagaagaggcagcaccctatgggagtccaagagctgacttt
gatgctagagacagccctagatctgattttgatggtcgacgggacctcgtcaagattatg
atcctggcagagagggtcccaagcgagatcatagatttggtgctaggcctgattttgcta
gaggagaccgtccaagagactttgaaagcagggaaggtgcaagagaatatggtgggagcc
cacatgcagactttgaggatatgcctcatggtgagccccggagtaaaagacctcctaggc
attgctccaggagttccggttgattcacatcatgtaaaaagtgatgaaaggggacccgcc
actgattatgacaaaagagatcttcatagaagggttccccgcagacctgactttgaagga
aatagaccctccagaccagactttaggcacggacctgacaggaatgctgactatgattat
gatgccaggggaatgccaagagattttgactacagagggcctcttagggattatgaagga
agggtgcacactcgggattttgatcaccggagtcctagagattttgatggcagaggtcca
ccaagagaatttgatgacagaaaccttccaagggatcatgaaggcagaatgggaccagtg
gacagttttccgctgaacagatctgaacgtgtgccacatggtgaaatcagggaaccctac
catcctggttttgaagcaggcccctttaatggacccaggcctagcttccttggagctggt
cctcgtcctcttagaccaagagtacctgttcagggaccaagtgggccacggggtcttgcg
ccacatatgcatcaagatagtcttgccagattccccgatgatgcacccatacccagtagt
cctatggatgaccccaggtggtcagtcatgcgtggcttacttggtaatgaagttaaggaa
gagattgtaatagatggaaagccatttgaagtccgcatgggtgtggaacgccgtatcaag
atctacaatgttgtttacgatgttctgattgatcctcttgatcgtggcattcgtgtaaat
ggagaactagtctacaaatttggtgaacccaagaaagatataagcttgggtgggaaggtg
gtggagatattttatcatggacctcatcgtgacatttggattgatggtcagcagtatcgt
ctgcgtatagatgcgccaccactcaacatggtgtttgataatacaatatatggttttcag
attgatggccgtgacaacatgatactggtggatagacttgagaaaggtacccttggaggt
ccccctcgtcctttaatcctgaatggtgttcatcatgaaatcagttttgagccaccacct
cgccgcattcttattgacaatcagtcatgcgagcttaagttagaccgaaaaattcctgtg
ataatgtacaataaaaagcctcatggtatccggtttgagggtgatcctcgcaacatctac
atcaatgatgttccatatctggtgccttttgacagggctgtaaaggtcaagattggacca
aggcctcactttcttgcatttggaggtccagcacatgaagttatcattgatggtagatgg
tatgaagtgaagttcaacaacaacccaaagaacatcaccattggtaatcgcatttgttca
gtgcgcctcgaaccacctgtaccacgtgtgaagatcttgtctgaaatgacagaggcatat
gatgagtctgcattactgaagtctaatcgcccatcaccatttgcacgcactccccagcag
ctgtcaccaaaagctgatttacgtcatcctcatccggttgattcagttaccattggtgtc
aggcagcgcattgatgcagatgtaacagccaaaccaattgtcgaaccaggatcaattggt
caaaatcagcctggtgcaggaatttcaacccccgttgttggagtactgcctgaaaagtca
cctttgcctgtttgtacatctcaagctgttgctgtggctcaggatgtaagttctggcaaa
cctccagccccagttgctgagactactactgtgaaccagtctccaaagcctgtggtatca
atgcagcaaggaactgaagctcttcatctccaagggatgggcatgaggcctccacatcag
caaagcgtgcggttccagggaactggatgccctgtagggcagggccctatgcaaggacct
aggccaggaccaggagcaatgttacaggcacaaaacttgatggggaattcaatgctgctg
gcaaatatgatgcagggactgcctatgatgcccgttaccatgccacaaattctggggctg
ccagaagcccttatgggcattcagcgtatgatgagcccacagatgggaggaaaccccttt
gcacagccaatgacaagcccgccttttattggaaacccaaccttgccacgtatgatttcc
ccatcaccaggcccatttgctaccacaggaccacaaattggacctataagcatccatcag
tcgatggtgactcagtcatctactccacagacattagtgacatctgctactcctcttaca
cctgctgctggcccagctgcttctcctgcggcccctgctgctggcgcatcaatgctggat
gtaaaagatctttttgaaaaacttgtggcagttggcatcatcaaaaaagaagagaaaaag
gaggagaccactgtgagtttagaggtagcaaaaccaaaagaagcacttgcagaaatccag
caggagatggtggagcaaaagcctttggttcctgctgtgaaacctaaaattgttattccc
aaaaaagagcctgcgtttgagcatccacctgatttatcagacttccagtcagtcaaactc
aaaaagcagtatagtgaggtggttcaccttctctaccaaggtattcagtgttcttcttgt
ggctgccgcttccctatgagtgaaactgagaaataccggcagcatttggactggcatttc
cgtgccaacaaacgagagaaggaagctgctaagattgccagctatcgcaagtggtactat
gaaatgaacgagtggattttgtatgaagaactggaagagtctgaagaaaaattgcgcagc
tctgtatttgaagaagaagcttctgcccattctgctgagaaccaagcatcttcatttcca
cttcagatacctgaaggggttgaagttattcataaccctacagcaacaggcaatgaaaaa
gaggatatttgcctgatctgcaatgatccatttgaacaatactgggatgaagaagcagaa
gattggcaccttagggatgctattaaagttgacggcaaggtatatcatcctgtgtgttac
gaagatgctaaagagggcagtggtgcaactgtcaccccaacgccgacagttgatgttgct
gtgaatccacttgaaactcagcttcagcattcagcatctgcaggtgtagcttttgaagag
gttccagcacctacaagagtgccagaaaaatgggaaacaaatgtgaaaactgagccttta
ccagtagaagaagcacacgtcacagctgcatcatctgtcacctcggctgacagcttacct
gaagctaaacacgaaatctctgactcttctcttcctgtcaagacagatacagcaacaact
gctgcagatacttcccatcctgttagctctgacattatgttagtaccagttgtcattaaa
acagagccaagcagtgataatgtaacagaacccttaactgttcctgttaaggtagagcct
acagattcattaatacctgaacagacttgtgctgaagccacattaaataaagccatttgc
aatacttcttcacctcccaccatgtctccatctttggagcaggttgctgatgttaaggaa
ccttctgcagtagaagagagtgcatcaaaagactcagaaaactaa
DBGET
integrated database retrieval system
