Pomacea canaliculata (golden apple snail): 112561882
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Entry
112561882 CDS
T05881
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112561882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcan03041
]
112561882
Enzymes [BR:
pcan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112561882
Spliceosome [BR:
pcan03041
]
Complex C
Other components
Step II factors
112561882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_DEAH11
Helicase_C
OB_NTP_bind
IBR
DEAD
IBR_2
IBR_1
HA2_N
AAA_22
KH_DEAH11_2nd
RRM_1
AAA_19
Helicase_RecD
nSTAND3
AAA_29
Motif
Other DBs
NCBI-GeneID:
112561882
NCBI-ProteinID:
XP_025090492
LinkDB
All DBs
Position
LG4:complement(9195625..9206824)
Genome browser
AA seq
1697 aa
AA seq
DB search
MKEEVNQNPCGQSCQPIPRRNHVSRSADHRDSQKELWKKPKTKTTELYVKIHDLIQDVAL
LEQVLTTKVNLEGFQLSLLKKDVMRSDTCTYCSVICPSKDLAKRLKHLLLKDRHMFTPLI
DCNFTGFDQSEVLQSRAEQRKEELRQQAQFELEKKSTRALKVHEEKLQAIMLQIDQAKGK
LNNLYTATQTKAEISALEAKVDENIRQKEEFCGAVDEFRKRVATALNGTNFEKTVNEARK
QFGIECCRFEKSLPMYARRRDIVDLVRSNQVSVILGETGSGKSTQMVQYLLEADFCNKGA
IVCTQPRKVAAISLATHVSSELATNVGKEVGYKVGSKCRTGDLTKVIFMTDHCLLNECLA
DPTLKAFSCIVVDEAHERSLYTDLLLGMIKRCLQKRPELRVIITSATIDPEVFVKFFGNC
PVLKVSGRTFPVDVVWLDDNNEEDEFENYMQKAVKKAEEIHLKEALGDILVFLTSPLETE
KCCEAFQQSLAGRNDFQCFQLHGQLQADEQQKVFEPLGKNKRKIVFATNCAETSITIDGI
KYVVDTGVAKEMRYDAKKNSNCLSVTVVSQSSAEQRKGRAGRTAPGKCYRLYSKYSYNAM
DKITLPEILRTHLGQALLKLAELGVGPDMYDFVQSPSQEAIEAALESLVQLGALSTNHRI
TEEGRWIAKLPLDPRLGLMTLKGKANGLLFDSIVLAALTNFGSVFYRGNTTKEQEQHDKS
KTRFSQTTGDCLTSLAVYKEWQHVPEKEKNRWCVANSINAKAMRSTRDMANEIIKTLKKE
YNLEVANEFSDKETTENCLRHMIFECYIGNLCHYLGMEKAGYFAARVSRQVHVHPSSCLT
SLASNPEWVVYEQLIKTSRDFITGVTPVDESWLADVAVENVGLDVEDIRKKKVMNVFTQA
AGSHAFFSMVGPRFCRLREYEDLGSSQGNFSVVVVEASREVKEVKVFSTEKANERLVKLV
KERVERSARELAREDTEQPVGKEESNLRVVLGTGGKVVELLMPDESRKVFIHRVTENSTE
EHILAKFQQFGEIRLCKKFVEGEKWGFLIFKTVAEAVNAAKETGDNEADAGELERRRPLK
QNADFKARLKWCRRPSSGFGYASISPAEYATCLLKSCFYVGSNLITIKPARNRENSLYFP
SLPRALSEDVLRRSLLHELGYDENTKGIVERVTIVRQKPYQTTDAELRDLEMTIEKTFQA
YLRTSQVKVSVEKPHKETSVMFGSEAVFTDPIEGIQACKRLQTEFYIHDQPVDVVPVIYA
TLTVPNQVLKVADAKVKDALNHFSGLAEIKSKPVHNDKHIFYIRASEVEDMVKVRKCLSD
IFKGEVLDCRKAPALAHLLNAAGLSFLRETQHKTSTYISVDSRLGTIAIHGTEAACTQVY
IEVNNYLDLVQSGTVEEMTLKGGDRPAGVLKALLMEYGEDLDRFRASSGLFVVSVDYRKH
KLRLTGSPESIEKAHDIVNKVVEKMKRSSRKDDEEDTIDCVICQCPVEAKELYRLELCAH
PYCLDCLKHQVAVAVTTRSLPVVCGREGCEREVAVRDLTFLTRRGDVNMSALTAAALSAF
VMRSGGAARFCVTPDCPVVYRTTAEEHAKVFVCPDCSVRLCTACHQQAHDGMTCAILRAN
KEGWQDVELWARQDPTRRKPCPGCYTPIEKTGGCRRMFCTVCKTTFCWMCSKKFASECAC
YEHLTIEHGGIFGENEL
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagaagtaaatcagaatccttgtggtcaatcttgtcagccaataccaagaaga
aatcatgttagtaggtcagcagaccatagagacagccagaaagagttgtggaaaaaacca
aagaccaaaacgactgaactttatgtcaaaatccatgatttaattcaggatgtggcactg
ctggagcaagtcctcacaacaaaggtaaacctggagggatttcagctttcgcttcttaaa
aaggatgtcatgagatcagacacctgcacatactgcagtgtgatctgtccaagtaaagat
cttgccaagagattgaaacatctactgctgaaggatcggcacatgtttacacctctcatt
gactgcaactttacaggatttgaccagagcgaggtcttacaaagtcgagcagaacagcgt
aaagaggaacttagacagcaagcacagtttgagctggaaaaaaagtctacaagagcttta
aaagtccatgaagagaaattgcaagctattatgcttcagattgaccaggctaaaggtaaa
ttaaacaacctttacacagccacacagactaaagctgagatttcagctctggaagctaaa
gtagatgagaacatcagacaaaaggaagagttttgtggtgctgtggatgagtttagaaaa
cgtgtggcaactgctctaaacggcactaattttgagaaaacggtaaatgaagctcgcaag
cagtttggcattgaatgctgtcggtttgaaaagtctctcccaatgtatgccagacgtcgg
gacatcgtcgatcttgtgagaagtaaccaagtgtccgtgatcctcggtgaaacaggttct
gggaaaagtactcagatggtgcagtatcttctagaggcagacttctgcaacaagggtgct
atcgtgtgcacccaaccgcgcaaggttgccgccatctccttggcgacgcatgtgtcatca
gaactggcgaccaatgtaggtaaagaggtcgggtacaaagtcggcagcaaatgtaggacc
ggggatttgaccaaggttatatttatgaccgatcactgtctgctaaacgagtgccttgca
gaccccaccttgaaagccttttcttgcatagttgtagacgaagcacacgaaagaagcctg
tacaccgatctgttgctgggcatgatcaagcggtgtctgcaaaagagaccggaactcagg
gtgatcatcacctcggcaacgatcgacccagaagtatttgtaaagttcttcggcaactgc
ccggtcctgaaagtttcgggtcgcacatttccagtggatgtagtttggctagatgacaat
aacgaagaagacgagtttgaaaactacatgcagaaggccgtgaagaaggcggaggagatc
catttgaaggaagcgctcggagacattcttgtgtttctcacgtcgcccttggaaacagag
aaatgctgtgaggcttttcagcagagtttggcaggacggaacgacttccagtgctttcag
ctacacggccagcttcaggctgatgaacagcagaaggttttcgagcctctgggtaaaaac
aaacgtaagatagtgtttgccacgaactgtgctgagacttctatcacgattgacgggatc
aagtatgtggtagacaccggtgttgccaaggagatgcgatatgatgccaagaaaaacagc
aactgcctaagcgtgaccgtggtcagtcagagctcggcggaacagaggaaggggagagca
ggtcgcactgcgccgggaaaatgctatcgtctgtactctaaatacagttataatgccatg
gacaaaatcactcttccggaaatccttagaactcatctgggacaggctctccttaaactt
gcagagttgggagttggaccggatatgtacgacttcgttcagtcccctagccaagaagcc
attgaagctgccttggagtcgctggtgcagctgggagctttgtctacaaaccaccgaatc
acggaagaggggcgttggattgcaaaacttcccttggacccacggttggggctgatgaca
ttgaaaggcaaagcgaatggtcttttgttcgattctattgtccttgctgccttaacgaac
ttcgggagtgttttctacaggggtaacaccaccaaggaacaggagcagcatgataaatct
aaaaccagattcagccagaccactggagattgcctgacctccttagccgtgtacaaggaa
tggcaacatgtgcctgaaaaagaaaaaaacagatggtgtgttgccaacagcatcaatgct
aaagccatgagatccaccagggacatggcaaatgaaataatcaagactcttaaaaaagag
tacaatctggaagtagccaatgagttttctgacaaagaaacaacagaaaactgcctgaga
catatgatttttgagtgttatattggcaacctgtgtcactatttaggcatggagaaggcc
ggatactttgccgcgcgtgtttcaaggcaagttcacgtgcatccttcgtcttgtctgacc
tccttagctagcaaccctgaatgggtcgtttacgagcagctgattaaaacatcgagagat
ttcatcacaggagtcacgccagtcgacgaatcgtggcttgctgatgtcgctgtagaaaat
gtcggcctcgatgttgaagacatccgtaagaaaaaagtgatgaatgtgttcacacaggcg
gcaggatctcatgccttcttctcgatggtaggtcctcgcttttgccggctaagagagtat
gaagatttggggagtagccaaggcaacttctctgttgtggtggtagaagctagtcgtgaa
gtaaaagaagtgaaagttttctctacagaaaaagcgaacgagcgtctcgtgaaactggtg
aaggagagagtggagcggtcggcacgagagcttgcacgtgaagacaccgagcagccggtc
ggcaaagaagaatctaatcttcgagttgttcttgggactggaggaaaggtggttgagcta
ctgatgcctgatgaaagtcgaaaagttttcattcatcgcgtgacagaaaacagcacggaa
gaacatatcttggcaaagttccagcagtttggcgagatccgactttgcaaaaagttcgtc
gagggcgagaaatggggtttcctgatatttaaaactgtggcagaggctgtcaacgccgcg
aaagagaccggagataacgaggctgatgctggtgagctagaacgccgacgtccactgaag
cagaacgcagacttcaaggctcgcctcaaatggtgccgcagaccttccagcggattcggc
tacgcctccatttcgccagctgagtatgccacgtgcttactgaagagttgcttttatgtc
ggcagtaacctcatcacgataaagccagcacggaatcgggagaattccttatacttcccc
tcattaccgagagcattgagcgaggacgtgctcagacgttcgcttttgcacgagttgggc
tatgatgaaaatacgaaggggattgtcgaacgtgttacaatcgttcgccagaaaccatac
cagacgacagatgctgagctcagggatctcgagatgacaatcgagaaaacgtttcaagct
tatcttcgcacttcgcaggtgaaagtttctgtcgaaaagccgcacaaagagacgtccgtc
atgtttgggagcgaagcagtattcaccgaccccattgaaggaatacaggcgtgcaaacgt
cttcagacagaattttacattcacgatcagcccgttgatgtggtgcctgtaatatatgct
actctgactgtcccaaaccaggtactgaaagtagcagacgcaaaggtgaaagatgccttg
aatcacttttctggtcttgcagaaattaagtcaaagccggtgcacaatgacaaacacatt
ttctacatcagggcctctgaagtggaggacatggtaaaagtaagaaaatgtctcagcgat
atcttcaaaggcgaggtgttagattgcaggaaagctcctgcacttgctcatctattgaat
gctgcgggccttagttttctgcgagaaactcaacataaaacgagcacttacataagtgtc
gacagtcgtctgggaaccattgctatacacggcacagaggcagcctgcacccaggtttac
attgaagtcaacaactaccttgacttggtgcagagtggtacagtggaagagatgacactg
aagggcggagacaggcccgcaggtgtcttgaaggcgcttctcatggagtacggagaggat
ctagacaggttccgagcctcctcgggtctcttcgttgtctcagtcgactaccgaaaacac
aagctgcgactgacaggatcacccgaaagtatcgagaaagctcacgacatagttaataaa
gttgtcgagaagatgaaaaggtcgtcgagaaaagatgatgaggaagacaccatcgactgc
gtgatctgccagtgtcccgttgaagccaaggagctgtaccgcctggagctgtgcgctcat
ccttactgcctggactgcctgaagcaccaggtggcggtggccgtcacgactcgctccttg
cctgttgtctgcggacgcgaggggtgcgagcgcgaggtggccgtacgcgatctgaccttc
ttgacccgtcgaggtgacgtcaacatgtcggcgctgaccgctgctgccctctcggcgttc
gtgatgcgtagcggaggcgccgcccgattctgcgtcacgcccgactgccccgtggtgtac
cgcacgacggccgaagagcacgccaaggtgttcgtttgccccgattgcagcgtccgactg
tgcaccgcctgccaccagcaagcgcacgacggcatgacgtgcgccatcttgcgggccaac
aaggagggctggcaggacgtggaactgtgggccagacaggacccgacacgacgtaaacct
tgccctgggtgttacacgccgatcgagaaaactggcggatgccggaggatgttctgcacc
gtgtgcaaaaccaccttttgttggatgtgttctaaaaagtttgcgtcagaatgcgcctgt
tacgagcaccttacgatagaacacggggggatctttggtgaaaatgaactctaa
DBGET
integrated database retrieval system
