Pomacea canaliculata (golden apple snail): 112562005
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Entry
112562005 CDS
T05881
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin-like
KO
K06100
symplekin
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112562005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcan03021
]
112562005
03019 Messenger RNA biogenesis [BR:
pcan03019
]
112562005
Transcription machinery [BR:
pcan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112562005
Messenger RNA biogenesis [BR:
pcan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
112562005
U7-dependent histone pre-mRNA processing factors
112562005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
112562005
NCBI-ProteinID:
XP_025090718
LinkDB
All DBs
Position
LG4:complement(18813291..18837750)
Genome browser
AA seq
1449 aa
AA seq
DB search
MAGLIAGTTVKRLSTAAQFFTDEEHNEEDEAETAKQSTSEKVVDLLNRASVLTKDNEKTG
LLKQVQELIIHKDPELLDNFLDEMIAFQTDRSVDVKKCIIGFMEEACKKDPECLPRVMPS
LAHLFADENINVQKKVILSFATIYRSALQWVSKAKSVRSEMTAVWEHVNQIKSRMVEMLD
SDNDGVRTHIVKFLEGLTLALSKKSPESEMPKKQEGDLSLDQVMENNRLIRLKKLEEEGQ
TSFLTLLQFQGSLHISSINLMTVMGALTNIARQRPQFFDQVVQGFEALHVNLPPTLAKSQ
VSSVRKNLKMQMLMLLRHPMSADFVPQITTLLTDLGATQSEINKALPKEESRKRKTEEPG
PSALKKAKTEPLLPEIDDDDDIGMTPWTDRTRKQPTSLQRQTAIDITAEDLLPRLSVQHV
ADLVLLSMVMLPEAMPAQFQSTYTPIAAAGTDAQIKHISRLLATQLTMAGMGKGVGELKL
QAMKKVDDQKDGGETPAYDDGSTSPNSSSRLWLVDLLQGKKRSEQSTXRTDFLPPTSAPL
PRKGLRQFKLESVTKPLDSETLDAMTVAIFKRILDSERMASVNHIQGARTKILSCLTSQF
GGCLKDILEGYIFDDLRNRYDLAFSWLYQEYTNCQNYNSASIPGKAADMSSYDECLTRLL
KGLSEMPDQKDGLFHRLILEAPVITDNAMQIIRKFCANEAHTEAGMKTLRDLIMMRPKNR
LDFMDVMLTFTASERPEIRNPAIQTAQKLYENKQLRPSIEFYAIKQLKQLLETRPETSAD
QKRWQGGNAESWGEESIKAHLYLYLGLLPANHALIHELANIYTATSADIKRTILRVLEGP
VKGMGMDSPELLRLVENCPKGSETLVMRVIHILTDKAVPSPELVDHIRDLYHKRVPDVRF
LIPVLNGLSKKEVIAALPKLIKLNPMVVKEVFNRLMGAHITANASYVSPLTPDELLVALH
NIDPLKCDMKTIIKAANMCFSERSIYTQEVLAIVMQRLMEQTPLPTLLMRTVIQSLSMYP
RLIGFVLNILQRLILKQVWNQKKVWEGFIKCCQRTKPQSFQVLLQLPPAQLSNVFQISPD
LRIPLLTHVRSFTPLQLAHIPPEIMHVLETEPEPVEEPMDTVPVTHEIEPEPAPPGVTEP
SPSSLPDAVLSSKIEANILASTIKIVSEAKPAIGKPQPISAVTAVRTATILPTLKSEEKP
SKTSSASNDAEEISQNAKSSAVVTLVQQTPDLQSHSLLTPVAVLTTSVSSTSDPITCAAI
QNMKPVSGTASNRFQLQGTGETGSESRNISSSENVCDIGISNTQMISSPELDVQNVIVPQ
ALFTTESAVKQEQMELRESPGKSPSLEEQPESTGSQSSGAAEELVAEAYEGQLPSGSNPS
NAKKTSRSPKSKPTTTELKSETSQKTTEEAQQEYDAPEEKSAEETTDTGKRRSGRTSKPP
PRRSTRTKK
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atggcaggattgattgcgggaactactgttaaaagactgtctacagccgcccaatttttc
acagacgaggaacacaacgaagaagacgaagcagaaacagctaagcaatccacatctgaa
aaagtggtagatctcctaaacagagcctctgttttgacaaaagataatgaaaagactgga
cttcttaagcaggtacaagagcttattattcacaaagatccagaacttctggataacttc
ttagatgaaatgattgcttttcaaactgatcgatcagttgatgtgaagaagtgtatcata
ggctttatggaagaggcttgtaagaaagatccagaatgtttgccacgtgtaatgccatct
ttggcacacctttttgctgatgagaatataaacgtgcagaaaaaagtaattctgtccttt
gcaaccatctaccgcagtgctttgcagtgggtaagcaaagctaaaagtgtgagatctgaa
atgacagcagtatgggagcatgtgaaccagataaagtctagaatggtggaaatgctagac
tctgacaatgatggagtgcgtacacatattgtgaaattcctggagggtctaactttagct
ctttccaagaagagccctgaatctgaaatgcccaagaagcaagaaggtgatttgtcttta
gatcaagtgatggaaaacaaccgtctgattcgactaaagaagctggaagaagaaggccag
actagcttcttgactttactacagtttcagggatcattgcatatttcaagtatcaacttg
atgacggttatgggagctctgaccaacattgccaggcaacgacctcagttttttgaccag
gttgtgcaaggctttgaagccttacatgtgaacctgcctccaactctggctaagtcgcag
gtcagcagcgttcgtaagaaccttaaaatgcagatgcttatgttgctgcgtcatcccatg
tccgcagattttgtcccacagatcaccactttgctcactgatcttggggccacccagtca
gagatcaataaagctcttcctaaagaggagagtcgtaagcgtaaaacagaggagccaggg
ccctctgctctgaagaaagcgaagactgaacctctgttaccagagattgatgatgatgat
gacattgggatgacgccatggactgacagaaccaggaagcagccaacatctttacagcgc
cagactgctattgatattacagcagaagatctactgccacggttatcagttcagcatgtg
gctgacttggtactgctaagcatggttatgctgccagaagcaatgcctgcacagttccag
tctacgtacacacctatagcagctgctggcactgatgctcaaattaaacacatctcccgt
ttgctagccactcagttgacaatggcaggcatgggcaaaggtgttggggaacttaaatta
caagctatgaagaaagtagatgaccagaaagatgggggagagactcctgcctatgatgat
ggcagtacatccccaaacagctcatccagactgtggttggtggacttactgcaagggaag
aagaggagcgagcagagcacatgaaggacagatttccttccaccaacctctgctccactt
ccacgaaaaggattacgtcagttcaagctggaaagtgtaaccaaacctttggattcagaa
acactggatgctatgactgtggccatctttaagcgcattttagattcagaaagaatggct
tctgtaaaccacatacagggagccagaaccaaaattttgtcttgcctgacttctcagttt
gggggatgtttgaaagacattctggaaggatacatatttgatgacctccgaaaccgctat
gacctcgccttttcctggctgtaccaggaatacaccaactgtcaaaactacaactcggct
agcattccaggaaaagctgcagatatgtcatcttatgatgaatgccttactcgtctctta
aaaggcttgtcagagatgcctgaccagaaagatggtctttttcatcgcttaatccttgag
gctcctgtcatcacagacaatgccatgcagattatacgcaagttttgtgccaacgaggca
cacacagaagcaggaatgaagacattaagagatctcattatgatgcgaccaaagaacagg
cttgacttcatggatgtgatgcttacctttacagctagtgaaagaccagagatacgtaat
ccagccattcaaacagcccagaagttatatgaaaacaagcagctgcgaccaagcattgag
ttttatgcaattaagcaactgaaacagctgcttgaaaccagaccagagacatcagctgac
cagaaacgttggcaagggggcaatgcagaaagctggggtgaggagtcaatcaaggcacac
ttgtatttgtatctgggtcttcttcctgccaaccatgctctgatacacgaacttgccaac
atctacacagccacttctgctgacatcaagcgtaccattctgcgagttctggagggacca
gtcaaaggaatgggaatggactccccagagctgcttcgtcttgtcgagaactgtccaaaa
ggctcggagaccctggtgatgagagtcattcatattctgactgacaaagctgttccatct
ccagagcttgtcgatcacattcgtgacctttatcacaaacgggtccctgatgtccgcttt
ttgattcctgtgctcaatggactttccaagaaagaggtaattgctgctctgcctaaactg
attaaactgaatccaatggtggtgaaagaggtctttaaccggctgatgggagcacacatt
actgctaatgcctcatatgtatcgcctcttacaccagatgaactgctagtggctctccat
aacattgatcccttgaaatgtgatatgaaaaccataatcaaagctgcaaatatgtgcttc
agtgaacgtagtatctacacccaggaagtgcttgcaattgtcatgcagcgactgatggaa
caaactcctttaccaactttgctgatgcgcacagtcatccagtctttatcaatgtatcca
cggctaattggatttgtcctcaacattcttcagagactcatccttaaacaggtgtggaac
cagaaaaaagtttgggagggtttcattaagtgctgtcagcgcactaagccgcagtcattc
caggtgcttttgcagctcccaccagcccagcttagcaatgtctttcagatctctcctgac
cttcgcattcctctacttactcatgtcaggtccttcaccccacttcagttagctcatatt
ccaccagagatcatgcatgtgcttgagacagagccagaaccagttgaggagccaatggat
actgttccagtcacccatgagatagaaccagagcctgcaccaccaggtgtgacagaaccg
tcaccgtctagtcttcctgacgcagtactgtcatctaaaattgaggcaaacatcttagca
tccaccattaaaatagtgtcagaggcaaaacctgcaataggaaaacctcagccaatatct
gctgttacagctgtaagaaccgccaccattctacctacactaaagagtgaagaaaaacca
tcaaagacctcatcagcatcaaatgacgcagaggaaatatctcagaacgcaaaatcttca
gcggttgttactctcgtccagcagacaccagacctgcagtcacactcactactcactcct
gttgcagtcctgaccacatcagtgtcatcaacatcagacccaattacctgtgcagctata
caaaatatgaagccagtgtcaggaacagctagcaacagatttcagttacaaggtactggt
gagacagggtctgagtcaagaaacatttcttcatcagagaatgtgtgtgatataggcatt
tctaacacccagatgatttcttctccagaacttgatgtgcaaaatgttattgtgcctcaa
gcacttttcacaacagagtctgcagtcaagcaagaacaaatggaattgagagaatcaccg
ggcaaatcaccaagtttagaagaacaaccagaatcaacaggttcacagagttctggtgct
gctgaagagttagtagcagaagcatatgaaggtcagttgccttcagggagcaatccaagt
aatgcaaagaaaaccagcaggagtccaaagtcaaagcctactacaacagagctcaagtca
gaaacaagccaaaaaaccacagaggaagctcagcaagaatatgatgcacctgaagaaaag
tctgctgaagagactacagacacaggaaaacggagatctgggcgaacttctaaaccacct
ccacggcgcagcacaagaactaaaaaataa
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integrated database retrieval system
