Pomacea canaliculata (golden apple snail): 112562167
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Entry
112562167 CDS
T05881
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan03040
Spliceosome
pcan04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112562167
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112562167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcan03041
]
112562167
04121 Ubiquitin system [BR:
pcan04121
]
112562167
03400 DNA repair and recombination proteins [BR:
pcan03400
]
112562167
Enzymes [BR:
pcan01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112562167
Spliceosome [BR:
pcan03041
]
Complex B
Other components
Prp19 complex
112562167
Complex C
Prp19-CDC5 complex
112562167
Ubiquitin system [BR:
pcan04121
]
Ubiquitin ligases (E3)
U-box type E3
112562167
DNA repair and recombination proteins [BR:
pcan03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
112562167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_WDHD1_1st
Prp19
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_Gbeta
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_WDR41
PEP5_VPS11_N
Beta-prop_HPS5
U-box
Beta-prop_DCAF4
Beta-prop_ACSF4
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
eIF2A
WD40_RFWD3
zf-Nse
Cytochrom_D1
Beta-prop_VPS8
RMC1_N
PUMA_CC
ATG16
Motif
Other DBs
NCBI-GeneID:
112562167
NCBI-ProteinID:
XP_025091017
LinkDB
All DBs
Position
LG4:complement(28000397..28010324)
Genome browser
AA seq
516 aa
AA seq
DB search
MALCCAISNEVPEHPVVSPVSGHVFERRLIEKYVNENGTDPLTGGKLQVDMLIDIKTSPL
VKPRPPTATSIPAILKALQDEWDAVMLHSFTLRQQLQTARQELSHALYQHDAACRVISRL
TKEVTAAREALATLKPQAGITAAVGSYAAPAPQPAYAAEAGPEAAQPVEETGMSDEVIQK
LQDKATLLTAERKKRGKTVPEGLANSDDIRAYRQLAFSHGKVILPGVHSASVPGILALDL
CLRDTSRIVTGGNDKTAVVFNKDTEQVMAILKGHTKKVTSVIYHPEEEIVITASPDTSIR
VWGVANAQCGQMIRAHDAPVTGISLHATGDYLLSCSTDMYWAFSDIRTGRVLTKVRDQKW
IPALTCAQFHPDGLIFGTGTDDAVIKIWDLKERANVANFQGHQGAVSSISFSENGYYLAT
AAEDSVVKLWDLRKLKNFKTLQLGDNYEVKALCFDQSGTYLAVAGTDVRIYLCKQWNELA
VFNDHTAAATGVRFGNNAGFVASVSMDRSLKFFGMS
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggcgctttgctgtgcgatcagtaacgaagttcctgagcatcctgttgtatctccagtg
tctggccatgtctttgagaggcgtcttattgaaaaatatgtcaatgaaaatggaacagat
ccgctcacaggtggcaaattacaagttgacatgcttattgacatcaaaacttctcccctt
gtaaagccacgaccacccacagctacaagcatcccagccatcttaaaagccttgcaagat
gaatgggatgccgtcatgcttcacagcttcacgcttcgtcagcagctacagacagcacgt
caagagttgtctcatgccctctaccagcatgatgctgcctgtcgtgtaatttctcgtctc
accaaagaagtaacagctgctcgtgaagctttggcaacactcaagcctcaggcgggtatc
acagctgctgtaggcagctatgcagctccagcgcctcagcctgcttatgctgctgaagca
ggccctgaggcagcacaacctgttgaggagactggcatgagtgatgaagttatacagaag
ctgcaagacaaggctacactgctgactgctgaacgcaagaagcgaggcaaaactgtgcca
gaaggacttgccaacagtgatgacatccgagcataccgccaacttgcattctcacacggt
aaagtaattctccctggagttcacagtgctagcgttcctggtattctggctctggatttg
tgtcttcgagacacctcccgcattgtcactggaggcaatgacaagactgcagtagtcttt
aacaaagacacggaacaggttatggctatcctgaaaggacacaccaagaaagttacaagt
gtcatctatcatccagaagaggaaattgtcatcactgcctcaccagacacatcaatccgc
gtgtggggtgttgccaatgcgcagtgtggacagatgattcgagctcatgatgctccagta
acaggcatcagccttcacgccactggagactacttattgagctgctctactgacatgtac
tgggcattttctgacatccgtactggccgtgtgctgaccaaggtgcgagaccagaagtgg
attcctgcccttacttgtgcccaatttcaccctgacggtctcatctttggcactggcact
gatgatgcggtcatcaagatttgggacttgaaggagcgtgctaatgtcgccaacttccag
ggacaccagggagctgtatcttctatttctttctctgagaatggttactatctggccaca
gcagcagaggattctgttgttaagttgtgggatcttcgtaaattgaagaacttcaaaact
ctacagctgggtgacaactatgaggtaaaagcattgtgttttgaccagagtggaacctac
ttagctgtggctggcactgatgtcaggatttatttgtgcaaacaatggaatgagcttgct
gtattcaatgaccacactgccgctgctactggtgtacgatttggcaacaatgccggcttt
gttgcatcggttagtatggatcgatcgctcaagttttttggcatgtcgtaa
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