Pomacea canaliculata (golden apple snail): 112564182
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Entry
112564182 CDS
T05881
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112564182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcan03041
]
112564182
03009 Ribosome biogenesis [BR:
pcan03009
]
112564182
Enzymes [BR:
pcan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112564182
Spliceosome [BR:
pcan03041
]
Complex A
U2 snRNP components
U2 related factors
112564182
Complex B
112564182
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
112564182
Ribosome biogenesis [BR:
pcan03009
]
Eukaryotic type
90S particles
Helicases
112564182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
ResIII
Flavi_DEAD
NACHT
AAA_7
ABC_tran
T2SSE
TsaE
AAA_29
PhoH
AAA_25
Motif
Other DBs
NCBI-GeneID:
112564182
NCBI-ProteinID:
XP_025094611
LinkDB
All DBs
Position
LG5:6549052..6567829
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AA seq
735 aa
AA seq
DB search
MQQGEMSKRRLDVGDSGAGKKSRDHRDGDKIKEEKESKPKSVFEQFNIPRPTLQMNPFTG
LPFTPRYYELFNKRTQLPVWEYKSQFLEMVSKHQILVLVGETGSGKTTQIPQWCLEWVRA
RYPKKAVACTQPRRVAAMSVAQRVSEEMDVCLGQEVGYSIRFEDCTSAKTVLKYMTDGML
LREAMSDPLLETYGIIILDEAHERTLATDILMGLLKEVAKQQKDLKIIVMSATLDAGKFQ
QYFDNAPLMSVPGRTHPVEIFYTPEPERDYLEAAIRTVLQIHMCEEDEGDILLFLTGQEE
IDEACKRISREVENLGPDIGELKCIPLYSTLPPNLQQRIFESAPPRKPNGAVGRKVVVST
NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKC
FRLYTEKAYKQEMQENTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALE
LLNYLAALDDDGELTELGSMMAEFPLDPQLAKMVIASCDSNCSNEILSITAMLSVPQCFV
RPTEAKKAADEAKMRFAHVDGDHLTLLNVYHAFKQNHEDPQWCYDNFINYRSLKSADNVR
QQLARIMDRFNLRRSSTEFTSRDYYLNIRRALVCGFFMQVAHLERTGHYLTVKDNQVVQL
HPSTVLDHKPEWVLYNEFVLTTKNYIRTVTDIKPEWLIKLAPQYYDMTNFPICEARRVLE
RIIAKLQSRQNDESH
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaaggagaaatgtcgaaacgaagacttgacgttggtgattctggcgctggaaaa
aagtcaagagatcatcgcgatggagataagattaaagaagagaaagaaagcaaaccgaaa
tcggtttttgaacagttcaacattccacgaccaacacttcagatgaatccctttacaggc
ttacccttcacgccacgctactatgaacttttcaacaaacgcacccagcttcctgtatgg
gagtacaaatcacagtttttggaaatggttagcaagcatcaaattctagtgctggttgga
gagacaggatcaggcaagacaactcagattcctcagtggtgtttggagtgggttagagca
cgctacccaaagaaagcagtggcatgcacacagcctcgtcgagtggctgccatgtctgta
gctcagcgtgtgtcagaggaaatggatgtatgtttggggcaagaagtaggctacagcatt
cgatttgaagactgcacttctgccaaaactgtgctgaagtatatgacagacggtatgctg
ctaagagaggctatgtctgacccactgcttgagacatatggaataattatccttgatgag
gcacatgaacgtacactggccactgacatattgatgggtctgttgaaggaggttgccaag
caacagaaagatcttaaaattattgtcatgagtgccacacttgatgcaggaaagtttcag
caatactttgacaatgcacctctaatgagcgtacctggcaggacccatcctgtggaaatc
ttttatactcctgaaccagagagggactatcttgaggcagccattcgtacagtccttcag
attcatatgtgtgaggaagatgagggggacattctgcttttccttacaggccaggaggaa
attgatgaggcttgcaagcggatttcccgtgaagtggaaaatcttgggccagatattggt
gaactcaaatgcattcctctgtattccacactgccgcctaatttacagcagcgaattttt
gaatctgctcctcctcgcaaaccgaatggtgctgtggggcgcaaagtggttgtatcaacc
aacattgctgaaacatcgttgactattgatggtgtggtctttgtcattgatcctggcttt
gccaaacagaaggtgtacaatcctcgtatccgagtggagtctttgttggtgactgccatc
agcaaagccagtgctcagcagcgtgcaggcagagccgggagaacacgtccaggcaaatgc
tttcgcctgtacacagaaaaggcttacaaacaggagatgcaggagaacacatatcctgag
attcttcgttccaatttggggtctgtggttcttcagctgaaaaaactgggcatcgatgac
cttgtgcactttgattttatggaccctcctgcacctgaaacactcatgcgagctttggag
ctgttgaactacttggcagcacttgatgacgatggagaactgacagaactaggatccatg
atggccgagttccctcttgatccccagcttgccaagatggtgattgcttcttgtgactcc
aactgcagcaatgaaatcctctccatcactgccatgctttcagtgccgcagtgttttgtg
cgacccaccgaggccaagaaggctgcagacgaggccaagatgaggtttgcccacgtggat
ggagaccacctgacccttctgaatgtctaccatgccttcaagcagaatcatgaagatcct
cagtggtgttatgacaacttcatcaattatcgctcccttaaatcagctgacaacgtgcgt
caacagctggcccgcatcatggaccgcttcaacctcaggcggtcctccacagaatttact
tctcgtgactactatctcaacattcgccgagctcttgtgtgtggcttcttcatgcaggta
gcccatttagagcgcacaggccattatctcaccgtcaaggataaccaggtagtgcagctg
catccgtcaacagtactggaccacaagccagagtgggtgttatacaatgaattcgtcttg
accaccaagaactatattcgaactgtcacagatattaaaccagaatggcttataaagttg
gcgccacagtactatgacatgactaacttccccatctgtgaagctagacgtgtgctagag
cggatcattgcaaagctccagagtcgccaaaatgatgaaagtcattga
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