Pomacea canaliculata (golden apple snail): 112564635
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Entry
112564635 CDS
T05881
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112564635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcan03019
]
112564635
Enzymes [BR:
pcan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
112564635
Messenger RNA biogenesis [BR:
pcan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112564635
mRNA degradation factors
3'-5' decay
Pan complex
112564635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML_2
eIF2A
Beta-prop_WDR3_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR5
Beta-prop_EML
Beta-prop_WDR3_2nd
EIF3I
zf-CCCH_2
WD40_Prp19
Motif
Other DBs
NCBI-GeneID:
112564635
NCBI-ProteinID:
XP_025095376
LinkDB
All DBs
Position
LG5:complement(8841109..8857666)
Genome browser
AA seq
1286 aa
AA seq
DB search
MNFRGIPGAGNFHGRRGVPGRQDILMDSHLMGQEAFHEPRQGVSSMFPEPIPPEMDYRTV
HRVLDCLSHYSVSSVCFDREELLWTGTHRGHVSSYYGMDFHKHTAFQVSPADIAEPEVRQ
ILTIDSGVLSLTSTNLRLTLRRGLPVYNFSDNDMQQMQCMIEIGPDSIRLGGHHNKVIEF
NTRKGQVVSKFEVDNAGCAIFRQAGKYLCAGDAAGKVTLYDVSTMHKEHVLDAHSSMLSD
FDIQGHLLVTCGFSRRMNNLVADRLLMVYDMRVMRAMAPIQVSIDPTFLRFVPTLSNHLI
VVSQMGSFQLTETTAMTPSMMIFPIDTHGAGISSFDISETCQALAFGDTAGYVHLFANNE
HAVFNSYDRPTEFAVPFEPPLRGIHITDDLASLSTVPMIYPVNEPLLSDWPSSMTAKIYR
KPKPIDPDILRSMKVVHNVHCVPNPGKTRRNQVPYKLGKENTSNRTASIPESPIGRGEDP
FVTVPKHYQRMLMRYTKLDDFDFRHYNKTNYAGLIAEQANSYCNGMLQTLYFIEPLRATL
LSHICQREFCLACELGFLFHMLDTKKGEACQAKNFLRAFRTIPEASALSLVLTETEEANG
QANIPRLIPSWHRFVLHQIHSETCQQADVTTDASEAGRNKEATATETVPEKKQESSASKA
KKKKKKNKKKEDNKVESVDPGEEGAVREDSARAVEDQQDEPVKSEEVSLVLELFAIKFKS
SFQCRCGVETWRDMQTMLITLNYPSPAASGNAIQQMTFAEVLHHSLTGQSTMQTWCNECD
RYQQHIQRRRVTSLPDILAIDCHLENEKELNFWKAQLQILKSQDEEAGDSESLKSISRPR
TKCRYGAACRRKDCRYWHGGDRNNDRQADSFGGQYGPSWIPMGLQIKLQEDGDVSIQEIS
DEEPLPEDENRRKEIYEVYAVVYCIHQQDTGRHLVTSVKVGEPYHQRKEGVTCHQWYLFN
DFSITPIEKPENVAVDLAWRLPCIVYFSRRTILQHHDTTVRSWCKPDILYNDPALINPKR
RKITFLPLQHDEVLVKGDLVGLDAEFISLKEEEAELRSDGTKSTIRPSHNSPGRITCIRG
QGEHVGEPFIDDYILTPEHVTDYLTEFSGIEPSELDPSTSTKHLTTLKSSYQKLRCLLNI
GVVFVGHGLKKDFKVINLQVPKEQNIDTVQLFHLPRQRFVSLRFLAWYFLDKNIQSGGHD
SAEDARTALQLYRRYRELETEGPEQLHAAIKDLYETGRKMSWKIPDSELVDPDTWKGPDP
DAGDSASPWPAPDSEDDLLDNLMGYL
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atgaacttccgaggcatccctggggctggaaattttcatggtagaagaggtgtgccgggc
cgacaagacatcctaatggattctcacttgatgggacaagaagcctttcatgaaccccgc
caaggagtttcatccatgtttcctgaacctattccacctgaaatggattaccggactgtg
cacagagttctagactgtctaagtcactattcagtgtcttcagtttgctttgacagagag
gaacttctttggacaggaacacatagaggtcatgtctcttcatactatggaatggacttt
cacaagcacacagcatttcaagtctctccagctgacatagcggagccagaggtgcgtcag
atccttactattgattcaggggttttgtccttgacaagtaccaatctgaggttgactctg
cgccgtggtctgccggtgtacaatttcagtgataatgacatgcagcagatgcagtgtatg
attgagattggtccagactcaattcgtcttggaggtcatcataataaggttattgaattt
aacacccgaaaaggtcaagttgtcagtaagtttgaagtggacaatgctggatgtgctatc
ttccgacaagctggaaaatatctgtgtgctggagatgctgcaggcaaggttactctgtat
gatgtcagcactatgcacaaggagcatgtgttggatgctcacagcagcatgttgtcagac
tttgacatacaggggcaccttcttgtcacttgtggtttctcaagaagaatgaataacctt
gtggctgatcgcctgttgatggtatacgacatgagagtaatgcgagccatggcaccaatt
caagtctccattgatcctacattcctgcgatttgtacctactctttccaatcatctcatt
gtggtttcacagatggggagttttcagcttacagaaaccactgccatgacaccatctatg
atgattttccctattgacactcatggtgcaggtatcagcagttttgacatctcagagact
tgccaggctctggcctttggagatacagcaggatatgtgcacttgtttgccaacaatgaa
catgctgtgttcaacagttacgatcgaccaacagagtttgccgttccttttgaaccacct
cttcgaggaattcacataactgatgacctggcttcattgtccacagttcccatgatctac
cctgttaatgaaccacttctttcagactggccatctagcatgacggccaaaatatataga
aagccaaagcctattgatcctgatattcttcgctccatgaaagttgttcacaatgttcat
tgtgttcccaatcctggaaagacacgccgaaatcaggtgccctacaaactgggtaaggaa
aatacatccaacaggacagccagcattccagaatctcctattgggcgaggtgaagatcca
tttgtaacagttcccaaacattatcagcgcatgttaatgcgctatactaagcttgatgac
tttgacttcaggcattacaacaaaaccaattatgccgggttgatagccgagcaagcaaat
tcctactgtaatggtatgctacagacattgtatttcattgagccactgagagcaacactg
ttgagtcacatatgtcagcgggagttctgcctagcatgtgagttgggtttcctgttccac
atgctggacacaaaaaagggggaagcatgccaggcaaaaaactttttgagagcttttcgc
acaataccagaggcatctgctttgagtctggtattaacagagacagaggaggccaatggt
caggccaatattcctcgccttattcccagctggcatcgctttgtcctgcatcagattcat
tcggaaacctgccagcaagcagatgtgacaacagatgcaagtgaagcaggtagaaacaaa
gaagctacagcaacagaaactgtccccgagaaaaagcaagagagcagtgctagcaaagcc
aagaaaaagaagaagaaaaacaagaagaaggaagacaacaaagtagagtctgtggatcct
ggagaggaaggtgcagtgagggaggacagtgcaagggcagtggaggaccagcaagatgaa
ccggtgaaatcagaggaggtgtccttggttctcgagctttttgcaataaaattcaagtca
tcatttcaatgccgatgtggagtggaaacatggcgtgacatgcagaccatgcttatcact
ctcaactacccatctccagcagcttcaggaaatgcaatacagcagatgacctttgcagaa
gtgctacatcatagcctgacaggacagagtacgatgcagacatggtgcaatgagtgtgat
cgctaccaacagcacatacagagaagaagggttacttctctgccagacatcctagccata
gattgtcatctggagaatgagaaggagcttaacttttggaaagcacaactacagatttta
aagagccaagatgaagaagcaggggactctgaaagtcttaagtcaatctcaagacccaga
acaaagtgtcgttatggagctgcctgcagaaggaaagattgtcgctactggcacggggga
gacaggaacaatgatcgccaggctgatagctttggaggacaatatggtcccagctggatt
cccatgggactacaaattaagcttcaggaggatggagatgtttccattcaggaaatttct
gatgaggaaccactgcctgaagatgagaatagacggaaggagatatacgaagtatatgct
gtggtatattgcatccatcagcaagatacaggtcgccatctggttaccagtgttaaagtg
ggtgaaccataccatcagcgtaaagaaggtgtcacttgtcatcagtggtatctcttcaat
gatttcagcattactcccattgaaaagcctgagaatgtggctgtagaccttgcctggaga
ttgccttgcattgtttatttctcacgccgtacaatcttgcagcatcatgatacaacagta
cgtagctggtgcaagcctgacattttgtacaatgacccagcattgataaatcccaagaga
cgaaagattacattcctaccactacagcatgatgaggtgcttgttaagggagatctggtt
ggtctggatgccgagtttatttctctcaaggaggaggaagcagagctgcgtagtgatggc
acaaagtctacaataaggccatcacataacagccctggacggatcacatgcattcgagga
caaggtgaacatgttggagaaccatttattgatgactacattcttaccccagaacatgtg
acagactatctgactgaattttctggcattgagccgagtgagttagatccgagtacatct
accaagcatttgaccacgttgaagtcttcctaccaaaaattgaggtgtctgcttaacatt
ggtgtggtctttgttggtcatgggcttaagaaggatttcaaagtcatcaatctccaagta
cccaaagaacaaaacattgatactgtgcagctatttcatcttcctcgtcagcgttttgtc
tccctgagatttcttgcttggtacttcctggataagaacatccagtccggaggccatgac
tccgctgaagatgcccgcacagcgctgcagctataccgcaggtatcgtgaacttgagact
gagggaccagaacaacttcatgcagccatcaaagatttgtatgagacaggccgcaagatg
tcatggaagattccagattcagaacttgttgatccagatacctggaaaggacctgaccct
gatgcaggcgattctgctagcccttggcctgctccggattctgaggatgacttgttggac
aacctcatgggctatttgtga
DBGET
integrated database retrieval system
