Pomacea canaliculata (golden apple snail): 112564709
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Entry
112564709 CDS
T05881
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription and DNA repair factor IIH helicase subunit XPB-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan03022
Basal transcription factors
pcan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112564709
09124 Replication and repair
03420 Nucleotide excision repair
112564709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcan03021
]
112564709
03400 DNA repair and recombination proteins [BR:
pcan03400
]
112564709
Enzymes [BR:
pcan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
112564709
Transcription machinery [BR:
pcan03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112564709
DNA repair and recombination proteins [BR:
pcan03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112564709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA_34
DUF4460
AAA_19
Cryptochrome_C
Motif
Other DBs
NCBI-GeneID:
112564709
NCBI-ProteinID:
XP_025095503
LinkDB
All DBs
Position
LG5:30535665..30549954
Genome browser
AA seq
792 aa
AA seq
DB search
MGGSRKERKEERKVKRARVEEDYYEVEDDDDIVDSGEVTKEVPLAALQNCEKGDEVAKTD
EFGAQDYRKILELKLDHGSRPLWVAPNGHIFLESFSPVYKHAHDFLIAIAEPVCRPEHIH
EYKLTAYSLYAAVSVGLQTNDIIEYLRRLSKTSLHEGIIEFIKLCTLSYGKVKLVLKHNR
YFVESQFPEVLQKLLKDPAIMSSRKRQEDEEAGDSFIPGELSSKSALQLKKTTNTKVEDP
QPGTSADIQQTDGDKKEEVPDDIFMFYEKMDQEEEEEEEGQLKTVSFEIKQENVEDVQKK
CIELEYPLLAEYDFRNDTVNPDINIDLKPSTVLRPYQEKSLRKMFGNGRARSGVIVLPCG
AGKTLVGVTAACTVRKRCLCLATSGVAVEQWRSQFKMWSTIDDSLICRFTSDAKDKPMGC
AVCISTYSMLAHTTKRSYEAEKMMEWLQNQEWGLMVLDEVQTIPAKMFRRVLTIVNAHCK
LGLTATLVREDDKIADLNFLIGPKLYEANWMELQNLGFIARVQCAEVWCPMTPEFYREYL
STKSQKKLLLYGMNPNKFRACQFLIRYHERRNDKIIVFSDNVFALQHYAVTLNKPYLYGP
TSQGERLQILQNFQHNPKVNTIFVSKVADTSFDLPEANVLIQISAHGGSRRQEAQRLGRI
LRAKKGSAAEEYNAYFYSLVSQDTMEMAYSLKRQRFLVNQGYSYKVITRLDGLDEEDLLY
RTKEEQMQLLQKVLAATDKDAEEERVIGEGGRVIVQRKVGNMSSMSGADDTIYMEYNKRK
AVHPLFKKFKKH
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgggaggcagcagaaaagaacgaaaagaagaaagaaaagtcaagcgagcacgggtggaa
gaagattattatgaagtggaggatgatgacgatattgttgattcaggagaagtcaccaaa
gaggtgccattagcagcacttcagaactgtgagaaaggagatgaagtggccaaaacagat
gagtttggagcacaagattacaggaaaatcttggagttaaaattggaccatggttcaaga
cctctgtgggttgcacccaatggccacatttttttggaatctttttctccagtctacaag
catgctcatgactttctgattgccattgctgagcctgtttgccgaccagaacatattcat
gagtataagctgacagcatactccttatatgctgctgtatctgtgggacttcagaccaat
gatatcattgaatacttgagacggctgagcaagacttcactccatgaaggcataattgag
tttataaagctttgtactcttagctatggaaaagtgaagctggtactgaaacataaccgc
tattttgtggagagtcaatttccagaagtgctgcagaaacttcttaaagatccagctatc
atgtccagtcgcaagcgccaggaagatgaggaagctggcgatagctttatacctggagag
ctgtcaagtaaatcagctttacagctgaagaagacaacaaatacaaaggtggaggaccca
cagccaggcacatcagcagatattcagcagacagatggagacaaaaaggaagaagttccc
gatgacattttcatgttttatgaaaagatggatcaggaggaggaagaggaggaggagggc
caactaaagacagtatcatttgagatcaagcaggagaacgtggaagatgttcagaaaaaa
tgcattgaacttgagtacccacttctggcagagtatgactttaggaatgacactgtcaat
ccagatattaacattgatttgaagccatccacagtgttaaggccttaccaggagaagagt
ttgaggaaaatgtttggcaatgggagagctaggtctggtgtcattgtacttccctgtgga
gctggcaagactttagtgggtgttacagcagcctgtactgttcgcaagagatgcctgtgt
ctggccacctcaggtgttgctgtggaacagtggcgctctcagttcaaaatgtggtctaca
attgatgacagtctcatttgccgctttacatcagatgccaaagacaagccaatgggttgt
gctgtgtgcatcagcacatactcaatgctggcgcataccactaaacgctcctatgaagca
gagaagatgatggagtggctacagaaccaggaatgggggctgatggtgctagatgaggta
cagacgatccctgctaaaatgtttcgacgagtgttaactattgtaaatgctcactgcaag
ctggggctgactgctacactagtgcgagaagatgacaaaattgcagatctgaacttccta
attggccccaagctatatgaggccaactggatggagcttcagaacttgggttttattgca
cgtgttcagtgtgcagaggtatggtgcccaatgaccccagaattctacagagagtatttg
agtacaaagtcacaaaaaaaattgttgctgtatggcatgaacccaaacaagttccgagca
tgccagttcctgattcgctatcacgagaggagaaatgataaaattattgttttctcagac
aatgtctttgcccttcaacattatgctgtcacgctaaacaaaccctacctgtatggtcct
actagtcagggagagcggcttcagatcctacagaactttcagcataatcctaaggtcaac
acaatctttgtctccaaggtggctgacacatcatttgatttgccagaagccaatgtgctt
atccaaatatcagctcatggtgggtctcgtcggcaggaggcccagcgcctgggtagaatt
ctgcgagccaagaaaggctcagcagctgaagaatacaatgcctacttctattcactggta
tcacaagacacaatggagatggcctactcactgaagcgtcagcgatttctggtcaaccag
ggctacagctacaaggtcatcacaaggctagatggcttagatgaggaggacctgctgtac
cgaaccaaggaggaacaaatgcagcttctgcagaaggtccttgctgccactgataaagat
gcagaggaggaaagggtgattggcgagggtggccgagtcatagtgcagcggaaagtggga
aatatgagttctatgtcgggggctgatgacactatctatatggaatacaacaagagaaag
gctgtccatccactcttcaagaagttcaagaagcattga
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