Pomacea canaliculata (golden apple snail): 112571587
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Entry
112571587 CDS
T05881
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pcan
Pomacea canaliculata (golden apple snail)
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcan03016
]
112571587
Enzymes [BR:
pcan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
112571587
Transfer RNA biogenesis [BR:
pcan03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
112571587
Prokaryotic type
tRNA splicing ligases
112571587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
112571587
NCBI-ProteinID:
XP_025106465
LinkDB
All DBs
Position
LG9:complement(3128233..3137721)
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AA seq
504 aa
AA seq
DB search
MRTYNEELKYIEKISPVCWKINKGFVENMNVDGYFYVNQRLEKLMFDELKQSCNAKGFGG
FLPGMKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNLAAFDMSNPKAVVSPGGVGFDIN
CGVRLLRTNLHEKDIQPIKEQLAQCLFDHIPVGVGSKGIIPMTAQNLEEALEMGVDWSLR
EGYAWAEDKEHCEEYGRMLNADPSKVSSRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDEF
AAKKMGVEFQGQVCVMIHCGSRGLGHQVATDALVVMEKAMKRDKIEVNDRQLACALINSM
EGQDYLKGMASAANYAWVNRSSMTFLARQAFAKMFKTTPDDLDMHVIYDVSHNIAKVEEH
YIDGRQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTDVGMAE
TFGTTCHGAGRALSRAKSRRNLDYTNVLAALEEKGISIRVASPKLVMEEAPESYKDVTDV
VDTCHAAGISKKCIKLRPVAVIKG
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagaacttacaacgaggaactgaaatatatagagaaaatttcaccagtctgctggaaa
atcaacaagggatttgttgaaaacatgaatgttgatggctatttttatgtcaatcaacgc
ttggagaaactaatgtttgatgagctcaagcagtcctgtaatgccaaaggttttggaggc
tttttgccaggcatgaagcagattgctaatgtagcagcattgcctggtattgtagggaga
tcagttggtttgcctgatgtccactctggatatggatttgcaattggcaaccttgcagcc
tttgatatgagtaaccccaaagcagttgtttcacctggcggtgttgggtttgatatcaac
tgtggtgtgcgcctgctccgcacaaaccttcatgagaaagatattcagcccataaaagaa
cagctggctcagtgtctttttgatcacatccctgttggtgttggctccaagggcataatc
cccatgacagcacaaaatttggaagaagccctagaaatgggagtggactggtccctgaga
gaaggctatgcctgggctgaggacaaggagcactgtgaagaatatggccgcatgctaaat
gctgacccatccaaagtctctagtcgtgctaaaaagagagggcttccccagttaggtacc
ctaggagcaggtaaccattatgcagagattcagatcgtggatgaaatctatgatgaattt
gctgcaaagaaaatgggagtagaatttcaaggacaggtgtgtgtcatgatacactgtggc
agtcgaggcctgggtcatcaagtggcaacagatgccttggtggtgatggaaaaagcaatg
aagcgtgacaaaattgaggtgaatgaccggcagctagcatgtgctctcattaattccatg
gaaggtcaggactacctcaaaggcatggcatcagctgctaactatgcctgggtcaaccgt
agctccatgacctttctggctcgacaggcttttgcaaaaatgttcaagactactccagat
gatttagacatgcatgttatttatgatgtctcacacaacattgcaaaagtggaagagcat
tatattgacggacgtcagaagactctcctggttcaccgcaaaggttcaacacgagctttt
cctccacaccatcccctgatccctgtggactatcagttgacaggccaacctgtgttgatt
ggcggcaccatgggaacatgtagctatgtcctgactgggacagatgttggtatggctgag
acatttggaacaacctgccatggggctggaagagcactgtctcgggccaagtctcggcga
aatttggactacaccaatgtgttggcagcactggaagagaaaggcatcagtatcagggtg
gcttcacctaagctggttatggaggaggcacctgaatcgtacaaggatgtaactgatgtt
gttgacacctgtcatgctgcaggcatcagcaagaagtgcatcaaactacggccagttgct
gtcatcaagggataa
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