Pomacea canaliculata (golden apple snail): 112574950
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Entry
112574950 CDS
T05881
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112574950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcan03019
]
112574950
03041 Spliceosome [BR:
pcan03041
]
112574950
Messenger RNA biogenesis [BR:
pcan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112574950
Spliceosome [BR:
pcan03041
]
Complex B
Other components
Prp19-related factors
112574950
Complex C
112574950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
NRDE-2
TPR_15
ARM_TT21
PPR
TPR_10
Motif
Other DBs
NCBI-GeneID:
112574950
NCBI-ProteinID:
XP_025112165
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All DBs
Position
LG11:11889466..11901871
Genome browser
AA seq
855 aa
AA seq
DB search
MPVSENETTKIFFEEEDLAYEEDILRNPFSVKCWLRYIEFKKEASKDVINTIYERALKQL
PGSYKLWYNYLKLVRKQVRGRCVTDPAYEDANSAHERALVFMHKMPRIWIDYVQFLMDQG
KITRTRRTFDRSLRALPITQHNRIWPLYLRFARMYDLQETAVRIYRRHLKLQKENTEEYI
EYLISIGWLDEAAMRLADVINDENFVSKEGKSKHQLWNELCKLIAENPSKVTSLNIEPII
RQGLKRYTDQIGVLWNSLADYYIRGGHFERARDIFEEAIETVITVRDFTQVFDACAQFEK
NIIAAKMESMEESGASEEDDLELELRLARLEALMDRRPLLLNSVLLRQNPHNVHEWHKRV
KLFEGKPQEIINTYTEAVQTVDPKQASGKPHTLWVEFAKFYENADQIEDARLIFSKAVLV
EYKHVDDLASVWCEWAEMELRHENDQEALKLMQKATTPPPRKVAYHDETEAVQARVHKSL
KVWSLYADLEESFGTFKSCKAVYDRILDLRIATPQIIINYGMFLEENNYYEDAFRAYERG
IALFKWPNVFDIWNTYLTKFINRYGGSKLERARDLFEQCLDACPEKFAKAVYLLYAKLEE
EHGLARHAMAVYDRATRAVLPEEQYEMFNIYLKRAAEIYGITHTRAIYEKALEVLPNDPA
REMCLRFADMEKKLGEIDRARAIYAHGSQISDPRVAPQFWEAWKEFEINHGNEDTVREML
RIKRSVQATYNTQVNFMSAQMLAATAKKDAAATAGGTGPAGGTEPNTMQQLEARARQLAE
ESLREKAAAEKKLLFVRSTTTDEELGELTKTHNPEEINIDEDSDDDEQVEEMEVTQQPVP
SKVFGGLKQDDDDSD
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgccagtcagtgaaaatgagaccacgaagattttctttgaagaagaggatcttgcctac
gaagaagacatcttgcgtaatcctttttcagtgaagtgttggcttcgctatattgagttc
aagaaggaggcttcaaaagatgtcattaacacaatttatgagagagccctcaaacagctt
ccaggaagttacaagctatggtacaattacctgaagctggtacgtaagcaggtgcgtgga
cgatgtgtgacagatccagcatatgaggatgctaacagtgcacatgagagggcacttgtt
tttatgcacaagatgccacgtatctggatagactatgtgcagtttctgatggaccaagga
aagatcactcgtacacgacgtacatttgatcgttcacttagagcacttccaattactcaa
cacaaccgtatatggccattgtacctcaggtttgctcgcatgtatgatctgcaagagaca
gcagtgcgcatttacaggcgtcaccttaagttgcagaaagaaaacacagaggaatatata
gaataccttatctccattggttggcttgatgaagctgcaatgcggcttgcggatgtcatc
aatgatgagaactttgtctccaaggagggcaaatccaaacatcagttgtggaatgaactt
tgcaagttgattgctgagaatccaagcaaagtcacgtcactcaatatagagcctatcatt
cgacaaggtttgaagaggtacacagatcagataggcgtcctttggaactctcttgcagac
tactatatccgtgggggccactttgagagggcccgtgacatttttgaggaagctattgag
acagttattactgtccgtgacttcacccaggttttcgatgcttgtgcacagtttgaaaaa
aatattattgctgccaaaatggaaagcatggaggagtcaggagcatcagaagaagatgac
ctggagttagagttgaggctggctcgtctggaagcattaatggatcgccgccccttgctt
ctcaacagtgttttgctacgccagaatcctcataatgttcatgagtggcacaagagagtt
aaactatttgaaggaaaaccacaggagatcatcaacacctatactgaagctgtgcaaact
gtcgatcccaagcaggcatctggtaagccacatacactgtgggtggaatttgccaagttt
tatgagaacgctgaccaaattgaagacgctcgactgatcttcagcaaggctgtactggtt
gaatacaaacatgtggatgacttggcatcagtgtggtgcgagtgggcagaaatggagctt
cggcatgagaatgaccaggaggcattaaagctgatgcagaaggcaaccactcctcctcct
cgcaaagtggcctatcatgatgagacagaagcagtgcaagcaagagttcacaaatccctg
aaggtgtggtctttgtatgctgatctggaggaaagttttggaacattcaagtcctgcaaa
gcagtgtacgaccgcatccttgaccttcgtatagccacgccacaaatcatcatcaactat
ggcatgttcttagaagaaaataactactatgaagatgccttcagggcatatgaaaggggg
attgctttgttcaagtggccaaatgtctttgacatctggaatacatatctcaccaagttt
attaacagatatggtggatccaagctggaacgagcaagggacttgtttgagcagtgtctg
gatgcatgtcctgaaaaatttgctaaagctgtctatctgctctatgcaaaactggaggag
gagcatggactagctcggcatgctatggctgtatatgacagggccaccagggctgtgcta
cctgaggaacaatatgagatgttcaacatctacctcaagagagctgctgaaatatatggc
ataacgcacacaagggcgatatatgaaaaggctctggaagttcttcccaatgatccagca
agggaaatgtgcttgagatttgctgacatggagaaaaagttgggcgagattgatcgagca
cgtgcaatttatgctcatggatcacagatcagtgatccaagggtggcccctcaattttgg
gaggcatggaaagaatttgagatcaaccatgggaacgaagacactgttcgtgaaatgctt
cgtatcaaacgtagtgtgcaggctacctacaatacacaggtgaactttatgtcggctcaa
atgttggctgcaacagcaaagaaggatgctgctgcaactgcaggtggtactggtcctgca
ggaggcacagaacctaacaccatgcagcaacttgaggcacgggccaggcagctggctgaa
gagtctctcagagagaaggcagctgcagagaagaaactgcttttcgtcaggagcaccacc
actgatgaagaacttggtgaactgaccaagactcataatccagaagaaatcaacattgat
gaagacagtgatgatgatgaacaagttgaggaaatggaagtgactcaacagcctgtgcct
tctaaggtatttggagggctaaagcaagatgatgatgacagtgactga
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