Phalacrocorax carbo (great cormorant): 104039747
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Entry
104039747 CDS
T08596
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104039747 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcao03021
]
104039747 (CPSF3)
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104039747 (CPSF3)
Transcription machinery [BR:
pcao03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104039747 (CPSF3)
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104039747 (CPSF3)
U7-dependent histone pre-mRNA processing factors
104039747 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
DUF1611
Motif
Other DBs
NCBI-GeneID:
104039747
NCBI-ProteinID:
XP_009499435
LinkDB
All DBs
Position
Unknown
AA seq
675 aa
AA seq
DB search
MTFVSFCRGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI
SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLE
ESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM
AAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQEL
LLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHIS
NLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMS
EPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKA
ALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKPEQGQRISGILVKRN
FNYHILSPCDLSNYTDLAMSTVTQTQAIPYTGPFNLLYYQLQKLTGDVEEIEIQQKPALK
VFKNITVIQEPGMVVLEWVANPANDMYADTVTTVILEVQSNPKIQKAAVHKISKKVDMDV
YRKRMEIMLQDMFGEDCVSSKDGSVLCVTVDGKTANISLETRTVDCEPGSEDDESLREMV
ELAAQRLYDALSPVY
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgtatccttttgcagaggtgctggccaagaagtaggaaggtcatgcattatt
ctggagtttaaaggaagaaaaataatgcttgactgtggaatccatcctggcctggaagga
atggatgctcttccttacattgatttgatagatcctgctgagatcgatctcctcctgatc
agtcatttccatttagatcactgtggggctttaccatggtttttgcagaaaacaagtttt
aaaggaaggacgtttatgactcatgccacaaaagctatttacagatggctgctttcagac
tatgtcaaggtcagtaatatatcagcggatgacatgctatatacagaaacagaccttgaa
gagagcatggacaagattgagaccatcaacttccatgaagtgaaagaggtggcaggaatc
aaattctggtgttaccacgcaggccatgttctgggagcagccatgtttatgattgaaata
gctggtgtgaagcttttatatacaggggatttctcaagacaggaagacagacatctgatg
gcagctgagatccccaatattaaacctgatattcttataattgaatccacatacggtact
catatccacgaaaaaagggaagagcgagaggcaaggttctgtaataccgttcacgacatt
gtaaatagaggaggtagaggtcttattcctgtgtttgccctgggtcgagctcaagaacta
cttttaattttagatgaatactggcagaatcatcctgaactccatgatatccctatatac
tatgcctcctctttggcaaagaaatgtatggcagtttatcagacgtatgtcaatgccatg
aatgacaaaatccgcaagcaaattaacatcaacaatccatttgttttcaagcatattagt
aatctgaagagtatggatcattttgatgatattggcccaagtgttgtgatggcttcccca
ggtatgatgcagagcggcttatccagagagttgtttgagagctggtgcacagataagaga
aatggagtaattatagcagggtactgtgttgaaggaacgcttgctaagcacatcatgtct
gaacctgaagagatcactactatgtcagggcaaaaactcccgctgaagatgtctgtggat
tacatttctttctctgctcacacagattatcaacaaaccagtgaatttatccgggccctg
aaacctccacatgtgattttagttcatggtgagcagaatgaaatggccagattgaaagca
gcattgatacgggaatatgaggataatgatgaagttcatattgaagttcacaatcctagg
aacactgaagctgtgacattaaacttcagaggagaaaaactcgccaaggtgatgggatct
ttagcagataagaaaccagagcaaggacagagaatttctggaatcctagttaaaagaaat
tttaactatcacatcctttctccatgtgacctctccaattatacagacttggcgatgagc
acagtaacacagacacaagccattccgtataccggcccttttaatctgctttattaccag
ctacaaaaacttaccggtgatgtagaagaaatagaaatccaacaaaaaccagccttgaag
gttttcaaaaatattactgtgatccaggaaccaggcatggtcgtccttgagtgggtggca
aatcctgctaatgatatgtatgcagacaccgtgacaacagtgatactggaagttcagtca
aatcccaaaatacagaaagctgcagtacataagatttccaaaaaagtagatatggatgtg
tataggaagagaatggagatcatgcttcaggatatgtttggagaagactgcgtgagttca
aaagatggctctgtcctgtgcgtcacagttgatgggaagactgcaaacatttcactggaa
actcggacagttgactgtgagccaggaagcgaagatgacgaatcccttcgtgaaatggtg
gaactggctgcccagaggctttatgatgccctcagcccagtatactga
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