Phalacrocorax carbo (great cormorant): 104039804
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Entry
104039804 CDS
T08596
Symbol
DDX55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcao03009
]
104039804 (DDX55)
Enzymes [BR:
pcao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104039804 (DDX55)
Ribosome biogenesis [BR:
pcao03009
]
Eukaryotic type
Pre-60S particles
Helicases
104039804 (DDX55)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Helicase_C_2
CTT_SPB4
SHOCT
AAA_22
Cas3-like_C_2
SBF_like
Motif
Other DBs
NCBI-GeneID:
104039804
NCBI-ProteinID:
XP_009512231
LinkDB
All DBs
Position
Unknown
AA seq
554 aa
AA seq
DB search
MNNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKMQVGAIIITPTRELAIQIEEVLS
HFTKHFPRFSQILLIGGRNPMEDVEKFKEHGGNIIVATPGRLEDLFRRKADGLDLASCVK
SLDVLVLDEADRLLDMGFEASLNAILDFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRI
SVKEKGVAASNTQKTPMRLENYYMICKADEKFNQLVHFLRQHKQEKHLVFFSTCACVEYY
GKALESLIKQVKIMSIHGKMKHKRNKIFTEFRKLPGGILVCTDVMARGIDIPEVHWVLQY
DPPSSASAFVHRCGRTARIGNVGSALVFLLPMEESYVNFLSINQKCPMQEMKPQTNVLDL
LPKLKSMALADRAVFEKGMKAFVSYVQAYAKHECNLIFRIKDLDFASLAKGFALLKMPKM
PELRGKCFPDFIPVTVNTDSISFKDKNREKQRQKQLEQQRKEREENGGRKKLIKNKAWSK
QKAKREKKKKITAKRKREEGSDIEDEDMEELLNDTRLLKRLKKGKITEEEFEKRLTGSQS
RLKAETVADLESEG
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgaataacaaagatgttgccgcagaagcggtaacaggcagtggcaaaaccttagcattt
gtaattcccatactggaaattcttctcagacgggaagaaaaattaaagaaaatgcaggtt
ggagctataattatcacaccaacgagagaattggctattcaaattgaagaggtgctgtca
catttcacaaaacacttccccaggtttagtcagattcttttaatcggtggtaggaatccc
atggaagatgttgaaaagtttaaagaacacggtgggaacatcattgtagctacaccaggc
cgcttggaggatctgttcagaagaaaagcagatgggctggatctggcaagttgtgtgaag
tcgcttgatgtgttggtgttagatgaagcagacagacttctagatatgggctttgaagca
agtttgaatgccattctggactttttgcccaagcagagacggacaggtctgttctcagca
actcagactcaagaggtggagaacctagtgagggcaggtctccggaatcctgtccgcatc
tcggtgaaagagaagggagtggcagcaagcaacacacagaaaactccaatgcgcctggag
aactattatatgatctgcaaagcagatgaaaaatttaatcagttggtgcattttcttcga
cagcacaaacaagagaaacatctagtctttttcagcacgtgtgcctgtgtggaatactac
gggaaggctttggaatccttaattaaacaagtgaaaataatgagcattcacgggaaaatg
aaacacaagcgtaacaagatttttactgagtttcggaagctcccagggggcattttagtt
tgcactgacgtgatggctcgtggcattgacattccagaagtacactgggttttacagtat
gacccacctagcagtgcaagtgcctttgtgcatcggtgtggtcgcactgcacggatcggc
aatgtaggcagcgcacttgtctttttgcttcccatggaagagtcttacgttaactttctc
tcaatcaaccaaaagtgtcccatgcaggaaatgaaaccacagacaaacgtgctagatctg
cttccgaagctgaagtctatggcccttgctgacagggcagtgtttgagaaagggatgaaa
gcgttcgtgtcttacgtccaggcttatgccaaacacgaatgtaacctgatcttccgaata
aaagatctggattttgctagccttgccaaaggttttgcattgttaaaaatgccgaagatg
cctgaactaagaggaaaatgttttccagactttattccagtcactgttaatacggactcc
atttcatttaaggataaaaatagagaaaaacagagacaaaagcaattagaacaacaaaga
aaagagagagaggaaaatggagggagaaagaaattaataaagaacaaagcctggtcaaag
cagaaagccaagagggagaagaaaaagaaaataacagctaaaaggaagcgtgaagagggc
tctgatattgaagatgaggatatggaagagctgctgaatgacacacgactcttgaaaaga
ttaaaaaaaggaaaaattactgaagaagagtttgagaagagactaacaggcagccagagc
agactcaaagcagaaactgttgctgacttagagtctgaaggttga
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