Phalacrocorax carbo (great cormorant): 104039888
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Entry
104039888 CDS
T08596
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104039888 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcao03021
]
104039888 (PCF11)
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104039888 (PCF11)
Transcription machinery [BR:
pcao03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104039888 (PCF11)
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104039888 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
CID
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
104039888
NCBI-ProteinID:
XP_009513350
LinkDB
All DBs
Position
Unknown
AA seq
1636 aa
AA seq
DB search
MYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDDIFPLKKLYA
LDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESAAPTSAVTSGASTPPAVPEI
QKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQGSSTIASVPAPS
KQHMSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDIKIVNRDPRLNRMTQHSSHAKDQSH
RKEFPPSTTSQSDTKANKTTQAEKQNSTKQEKLKASEKTQKKELDQSEAKSKSPSPLKNK
LPNTKDTKTQECESTKVSEISKRDPRLKRHLQDKSEGKEEEVKEKRRSTEKKEKEEHKTC
EHRPVGSRNKVINGAVQKQDMTTEESEKQGGKQGRSSSRKRSRSRSPKARSPSTHSPKRR
ERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSSKRNVKQEVRDPR
RVKKPAEDRPQETASQHSTKASPDPKENAENWQGSKSGKRWKSGWEENKNSQQNEEHQAL
GKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKRELLKKANERLTS
GEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLSDAELTYYEHKAK
LKRTQVQHSLSRLDLLDPDILDYHLPDALLSGIECEQAKAKRGVQFDRKEPFGERSRRHS
PVSGTNRPFADNLSPLEGRRRLEEQNATKGARGSKNFDPYDSWGESEEFRDALRQQGKST
TEFQKIDGDAICRFDNREERQLLGQAGVREEPRSPFSERFKRARYEDPEKAPFPESPGSR
FGGIEAKQRISALMEDRPLFDGSPRQAAARVGVDGQGSPFVDGPAAGSSSRIDGPPGQAA
LRFEGPLVGAGASQFDGPLAGTGGAGALRFDGPPGQLAGALRFEGPPGEVGRGGPLRFEG
PLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFEGPHGQPMGPRGQP
GGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEGPHGQPMGPHGPS
GGGLRFEGPHGPSGGGLRLEGPHGQPGVGPRLIDGPVHQGAGGLRFDGPLGRAGPRFDGC
HAAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQAQPRFDTAIPQRFDGPHQPASRFD
LPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPSHGMQFQRPDIFDGSPG
PNFNGPAGPGAQNFPLRAAGHYFDEKGLQGPQYGNFNNMPMGSSQVSLMSGQPGPYGQGQ
QYLPNPGSFVQNPAGALPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQVNETS
SQPAAEEEDDDQNEDQNVPDLTNFTVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDV
YADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEVV
LKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPS
CYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKQETQESCDSPKVKEEPDDTPTACAEE
STPASTDIKTEPDESV
NT seq
4911 nt
NT seq
+upstream
nt +downstream
nt
atgtaccttatggattccattgtcaagaatgtgggaagagagtatcttactgcatttact
aaaaacctagttgcaacatttatttgtgtatttgaaaaggtggatgaaaatactaggaaa
agtttatttaaattacgctccacatgggatgatatttttcctttgaagaaactatatgca
cttgatgtcagagtcaactcattagatcctgcttggccaattaaacctctgcccccaaat
gtgaatacttctagcatccatgtgaatcctaagtttttaaataaatcgccagaggaatct
gctgcacctacctctgctgtcacttctggtgcctctactcctccagctgttcctgaaata
caaaagaatttgacacaggagcaactgataaggcagcaattgcttgcaaagcaaaagcag
ttgctagaacttcagcaaaaaaaattagagctggagctggaacagactaaagcacagttg
gctgtatctcttagtgttcagcaagggtcatctactatagcttcagttccagcaccttcc
aagcagcacatgtctcctacacctcatatgacagtgaaaccacctcatcagactgctgtg
caatccgaaaagaacaaaccatccccaagtcctccacttcatgatatcaaaatagtaaat
agggatcctcgacttaataggatgactcaacattcttctcatgctaaggatcaatctcat
aggaaagaatttccaccaagcacgaccagtcagtctgataccaaggcaaacaaaacaaca
caggctgaaaaacaaaactcaacaaagcaagaaaaattgaaagcaagcgaaaaaacgcag
aagaaagaacttgaccagtcagaagcaaaatctaaatcaccatcccctttaaaaaataag
ctacccaatactaaagatactaaaacccaggaatgtgaaagcacaaaagtatctgaaatt
agtaagcgggatccaagacttaaaagacatcttcaagataagtcagagggcaaagaggag
gaggtgaaagaaaagaggagaagtacagagaaaaaagaaaaagaggaacataagacatgt
gaacataggccagtaggcagcagaaataaagtaattaatggtgctgttcagaaacaagac
atgactacagaggaatcagaaaaacagggtggaaaacaagggagatcaagtagtagaaaa
cggtcacgatcacgctctcctaaggcacggtcaccatctacacattctccaaaaaggcga
gagaggagatcacccaaaaggaggcttaggagtttatctcccacttcatcaactcctaaa
attgggaagatacgtcagataggccctaagcagtctcatgttgaagaaggtacacaagca
gcaagagatgaaagaaattctagtaagagaaatgttaaacaagaggtgcgagatccgagg
agagtgaaaaaacctgcagaagacaggccccaggaaacagcaagccagcattctacaaaa
gcatctcctgatccaaaggagaatgcagaaaactggcaaggatccaaatcaggcaagagg
tggaaatctggttgggaagaaaataaaaactcgcagcagaatgaagaacaccaagcactt
ggtaaatcccctcaccaaagacaccgggaaaactggcctgctggtaaaggaattctgtcg
ccccgagcaccaaagcagcagcaccggttaagtgtggatgctaatttacagattcccaaa
gaactgacatctgcaagcaagagagaattacttaagaaggccaatgaacgcttaacatct
ggtgaaataacacaagatgagttcctaatggtagctcatcagatccgacagttgttccag
tatcaggaaggaaagcacagatgtaatgtctgggatagccctacagaggaaaaatgtggt
ttgaaaaagaaacctcttctgtcagatgcagaactaacatactatgaacataaggctaaa
ctaaaaagaacacaagttcagcattcattgtcaaggcttgatctcttggatcctgatatt
ttggattatcatttgcctgatgcattgctctctggaatagaatgtgagcaggcaaaagcc
aagcgtggagtgcagtttgacagaaaagaaccatttggagaaagatcaaggagacactct
cctgtgagtggcactaatagaccttttgccgataacctctcaccacttgagggtcgacga
agattggaggaacaaaatgctactaaaggagcaagaggttctaagaactttgatccttat
gacagctggggagaatcagaagaatttagagatgctcttagacaacaggggaaaagcaca
acagagttccagaaaatagatggtgatgcaatctgcagatttgataatcgtgaagaaaga
cagcttcttgggcaagctggcgttcgagaggagccaagatcaccattcagtgaacgtttc
aaaagagcgaggtatgaagatccagagaaagcaccgttcccagaaagtccaggatcaaga
tttggaggcattgaagcaaagcagaggataagtgcactaatggaagacagacctctattt
gatggctcacctagacaggctgctgcaagggttggggtagatggacaaggaagtcctttt
gttgatggtcctgctgctggttcaagttccagaattgatgggccacctggacaggctgct
ctgagattcgaggggcctttggtgggggccggtgcatctcagtttgatggaccactggca
ggaacagggggagctggagccctaagatttgatgggccaccagggcagctggcaggggcc
ctgaggtttgaaggacccccaggagaggttggtcgaggaggtccactgagatttgaggga
ccgcttgggcagataggtgggcctttgcgattcgaggggcctgcagggcagcctgtaggc
ggtcctagatttgaaggacctggagtcggtctcaggtttgagggtccccgtggtcagcct
tcaggtggtctcaggtttgagggacctcatggtcaacctatggggcctcgaggtcaacca
gggggtggtctcaggtttgagggaccccatggtcagcccttggggcctcatggtcaacca
gggggtggcctcaggtttgaggggccacatttacagccattggggccccatggtcaacct
ggaggtggtctcaggtttgaggggccacacggtcagcctatggggccacatggaccatca
ggtggtgggctcagatttgaggggccgcatggaccatcaggtggtgggctcagattagaa
ggaccacatggtcagccaggtgtaggtcctaggttgattgatggaccagtacaccaggga
gctggcggacttcgatttgatggtcctctggggcgggctgggccgcgatttgatggttgt
catgcagctggatttgatggtcagcctggacagctctctctcttgcaaagatttgatgga
attcatggacaacctggtccgagatttgaaagggcgcctggccaacaggcacaaccacga
tttgatacagccatacctcagagatttgatggacctcaccagccagcctctagatttgac
ttgccccttggccttcaaggtgcacgttttgaaaatgtagctaaccatcctgcctcaaga
ctagaaatgtcaccatacggacaaggaggtccatttgtcgaacatcctggccagggctac
aatgggccatctcatgggatgcaattccagaggcctgatatatttgatggttcgcctgga
ccaaatttcaatgggccagctggcccaggagcacagaatttcccattgagagcagctgga
cattactttgatgaaaaaggtcttcagggtcctcaatatgggaacttcaataatatgcca
atgggaagtagtcaggtttctctcatgtctggtcaaccaggaccttatggccaaggtcaa
cagtatttgccaaatcctggaagttttgttcagaaccctgcaggagcccttccacattca
tatcccgataaccaccttgggcagcttgatgtcaatgagctgtttgctaaactgctgtca
acggggatcctcaaactgtcaaaaactgattccacttcagcacaagtgaatgaaacatca
tcccagccagctgctgaagaggaagatgatgaccagaatgaagatcaaaatgttccagac
ctcactaacttcacagttgaagaactgagacagcgttatgatagcgttataaatcgactg
tacactggaattcagtgttactcctgtggaatgagattcactacttcacagacagatgtt
tatgcagatcatttagattggcattatcgtcagaaccggacggaaaaagatgttagcaga
aaaattacacacagaagatggtactacagtttaacagactggattgaatttgaagaaata
gctgatctagaggagcgtgcaaaaagccagttttttgaaaaagctcatgaagaggttgtg
ttgaagacacaagaagctgcgaaagagaaggagtttcagagtgtccctgctggaccagct
ggagcagttgagagctgtgaaatttgccaagagcaatttgaacagtattgggatgaggaa
gaggaagagtggcatctgaagaatgctatcagagtagatgaaaagatttaccatccatct
tgctacgaagattaccaaaatacatcatcatttgattgcacaccatctcccagcaaaact
cctgtagaaaatccactaaatataatgttgaacattgttaaacaagaaacacaggagtcc
tgtgactcgcctaaagtcaaagaagaacctgatgacacccctactgcctgtgcagaagag
agcacacctgcatctacagatattaaaacagaacctgatgagtctgtttaa
DBGET
integrated database retrieval system
