Phalacrocorax carbo (great cormorant): 104040043
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Entry
104040043 CDS
T08596
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03013
Nucleocytoplasmic transport
pcao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104040043 (UPF3B)
03015 mRNA surveillance pathway
104040043 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104040043 (UPF3B)
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104040043 (UPF3B)
mRNA cycle factors
P-body specific factors
104040043 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
Motif
Other DBs
NCBI-GeneID:
104040043
NCBI-ProteinID:
XP_009507005
LinkDB
All DBs
Position
Unknown
AA seq
396 aa
AA seq
DB search
LPLSLFSSRSLYPHMFSRAYINFKNQEDIVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQK
AAKKKSKKKDAKTGTIEDDPEYKKFLESYSADDEKLTSTPETLLEEIEARNKELIAKKTT
PLLNFLKNKQRLREEKREERRRRELERKRQREEERRKWKEEERRKRKEAEKLKKVDRCPE
KERDRSKEEPKIKLLKKPEKDEKDLEKKEKSKKLEKEALREEKIASSASAKRSDGETKEE
KAKKSEDECVKDYRDRDRDFERDREYERAQREKLRRQEEERRRQKERFEKEKVFRRKEEE
VKKERDLLREKGKKSDLTDFTSSTDKSEKVTKDDKKEDTIKRDRIRNKDRPAMQLYQPGA
RSRSRLCQYEDSAAKPTDQGADKKQESETSNMKEEE
NT seq
1192 nt
NT seq
+upstream
nt +downstream
nt
cctccctctctccctcttctcttcccgcagcttgtacccgcacatgttctccagagccta
catcaactttaaaaaccaggaagacatagtcctcttcagggatcgctttgacggctatgt
tttcgttgaccacaaaggtcaggaatatgctgccatagttgagtttgcacctttccagaa
agctgcaaaaaagaagagtaagaaaaaggatgccaaaactggaactatcgaagatgatcc
agagtacaagaaatttttggaaagttacagtgcagatgatgagaaattaacctccactcc
tgaaactttgttggaggaaatagaggcaagaaacaaagagctaatagctaaaaagactac
tcctttattgaacttcttgaaaaataaacagagactgagagaagaaaaaagagaggagag
gaggaggagagaattggaaagaaaaagacaaagggaagaagaaagaagaaaatggaaaga
ggaggagagaaggaagagaaaagaagcagaaaaactgaagaaagtagacagatgcccaga
aaaagaaagagacagatcaaaagaagaaccaaagattaagctacttaagaagcctgaaaa
agatgaaaaagacttggagaaaaaagaaaaatccaagaaactggaaaaagaggctctgag
ggaggaaaaaattgcgagtagtgcatctgccaaacgatctgatggggagacaaaagaaga
gaaggcgaaaaaatcagaagatgagtgtgtaaaggactacagggaccgagatagagattt
tgaaagagacagagaatatgagagagcacagagggagaaactgaggcgccaagaagagga
gcgtcggaggcagaaagagcgctttgagaaagagaaggtttttagaagaaaagaggaaga
ggtgaaaaaggagagagacttactcagagaaaagggaaagaaaagtgatcttacagactt
taccagcagcacggacaaatctgagaaagtaaccaaagacgataaaaaagaggatacaat
taaaagggatcgtatcagaaacaaggatcgtccagcaatgcagctgtaccagccaggagc
gcgaagccgaagcagattgtgtcagtatgaagacagtgctgcaaagcccacagatcaggg
agcggataagaaacaggagagtgagaccagtaatatgaaggaagaggagtga
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