KEGG   Phalacrocorax carbo (great cormorant): 104040078
Entry
104040078         CDS       T08596                                 
Symbol
SEC13
Name
(RefSeq) protein SEC13 homolog
  KO
K14004  protein transport protein SEC13
Organism
pcao  Phalacrocorax carbo (great cormorant)
Pathway
pcao03013  Nucleocytoplasmic transport
pcao04141  Protein processing in endoplasmic reticulum
pcao04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:pcao00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    104040078 (SEC13)
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    104040078 (SEC13)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    104040078 (SEC13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcao03019]
    104040078 (SEC13)
   04131 Membrane trafficking [BR:pcao04131]
    104040078 (SEC13)
Messenger RNA biogenesis [BR:pcao03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     104040078 (SEC13)
Membrane trafficking [BR:pcao04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    104040078 (SEC13)
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    104040078 (SEC13)
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    104040078 (SEC13)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd EIF3I WDR55 Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_EML NBCH_WD40 WD40_RFWD3 MIOS_WD40
Other DBs
NCBI-GeneID: 104040078
NCBI-ProteinID: XP_009512940
LinkDB
Position
Unknown
AA seq 319 aa
VSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW
QVAWAHPMYGNILASCSYDRKVIIWKEENGTWEKTYEYTGHDSSVNSVCWAPHDYGLILA
CGSSDGAISLLSYTGDGQWEVKKISNAHTIGCNAVSWAPAVVPGSLIEQPSGQKPNYIKR
FASGGCDNLVKIWKEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI
WTCDDASGNSWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGLWACISD
VNKGQGGVSAVTEGQQNEQ
NT seq 960 nt   +upstreamnt  +downstreamnt
gtctcggtcattaacaccgtggacacctcccacgaggacatgatccatgatgctcagatg
gattactacggcactcggttagcgacctgttcttcagacagatccgtgaaaatctttgat
gttcggaacggagggcaaatcctcattgcggacctgagagggcatgaaggtcctgtgtgg
caggtggcctgggctcatcctatgtacggaaatatcttggcttcctgttcctacgacagg
aaggttattatctggaaggaggaaaatggcacttgggaaaagacatatgagtacacgggg
cacgattcctcagtgaattctgtctgctgggcaccgcatgactacggattgatcctggcc
tgcgggagctctgatggggccatttcgttactgagctacacgggtgacgggcaatgggaa
gtcaaaaagatcagcaatgcacacacaattggctgcaatgccgttagctgggctcctgcc
gtcgtaccaggaagccttatagaacaaccatctggtcaaaagccaaactacatcaaaaga
tttgcatctggaggctgtgacaacctcgtcaagatctggaaggaagaagatggtcagtgg
aaagaagagcagaagctggaggctcacagcgactgggttcgagatgtggcctgggctcca
tccataggtttgccaacgagtaccattgctagctgctcacaggacggcagagtgtttatc
tggacatgtgatgatgcctctggaaattcatggtcgccaaagctgctgcacaagttcaat
gatgttgtctggcacgtgagttggtccattactgcaaatattcttgcagtgtctggagga
gacaataaagtcacgctatggaaggaatcggtagacggactgtgggcatgtatcagcgat
gtcaacaagggccaaggaggggtgtctgccgttacagaggggcagcagaacgagcagtga

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