Phalacrocorax carbo (great cormorant): 104041036
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Entry
104041036 CDS
T08596
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104041036 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcao03400
]
104041036 (MSH6)
DNA repair and recombination proteins [BR:
pcao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104041036 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PWWP
Motif
Other DBs
NCBI-GeneID:
104041036
NCBI-ProteinID:
XP_009498577
LinkDB
All DBs
Position
Unknown
AA seq
1262 aa
AA seq
DB search
MEGYPWWPCLIYNHPTERTIVRGKGKSTRVHVQFFDDSPTRGWVSIKYLRPYKGSSDGET
LKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELAVCSEPSDTEEEEEGMEQMSESASGN
SDDCNSEEDVKSNKRVMSRESAIKAKRRRVLDSDSDHDGSDVEFKPDVKEAASSEEASSG
VDENESTDTETDTESVAESPIKVPSKRKRRAMNKPAKRSSLGNGRSETPKRAVTVSLEAK
SKLTSFAAPESFESQANACSGGIGGFTTWEHEKLDWLQEGKKKDAHRKRQSDPDYDPCTL
YVPEDYLNKCTPGMRRWWQLKSQNFDAVIFYKVGKFYELYHMDAVTGVNELGLIFMKGTW
AHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMMETRYKSMARPTKFDKVVRREICRI
ITKGTQTYSVLDCDPSENHNKYLLCVKEKEDSSGQRVYGVCFVDTSVGKFYVGQFSDDRH
CSRFRTLVAHYTPVQVLYEKGNLSVDTQKILKGSLVSCIQEGLISGSQFWNASKTLKVLL
EGEYFKEKQNSENGCSLPSVIKSLTSESDSLGLTPGENSELALSALGGCVFYLKKCLIDQ
ELLSLAKFEEYVPVDIDTARTTSPSNFFAKTDQRMVLDGVTLMNLEVLQNRTNGTTEGTL
LERIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLAVPDKMSEVSEHLKKLPDL
ERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYSKKKIADFLSALEGFKVMTEIVNVMEEI
ASDFKSKVLKQLVTRKAKNPDGRFPDLSAELKRWDTAFDHNQARKTGVITPKVGFDPDYD
KALQDIKAVEEDLHKYLDKQRKLLGFKSVLYWGAGKNRYQMEIPESAISRNLPEEYELKS
TRKGYKRYWTKEIEKMLAAMLNAEERRDAALKDCMRRLFYNFDKNSKDWQTAVECIAVLD
VLMSLANYSQDGDGPLCRPVILLPVDSAPPFLELKNSRHPCITKTFFGDDFIPNDIVIGS
KDEDSSSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEACRLTPIDRVFTRLG
ASDRIMSGESTFFVELSETSSILQHATQHSLVLVDELGRGTATFDGTAIASAVVKELAEK
IRCRTLFSTHYHSLVEDYSDNAAVRLGHMACMVENESEDPSQERITFLYKFIEGACPKSY
GFNAARLANIPEEVIQKGHRKAREFEKTTTALRIFRYLCMVVDGATRDANAVSKLTAMIN
HL
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttatccttggtggccgtgtctcatatacaaccatccaactgaaagaaccata
gtcagaggaaaagggaaatccactcgtgtccacgtacagttttttgatgacagccctacg
aggggctgggtcagtattaaatatctgaggccatacaaaggttcatcagatggggagacg
ctgaagggaggtatgttctatagtacaaagcctgaaataaaaagagcaatggtgctagcg
gacgatgcaatgagtaaagataaaactaagcggcttgaactggcagtatgcagtgaacct
tcagacacggaggaggaggaggagggaatggagcagatgagtgaaagtgcatcaggcaac
agtgatgactgcaatagtgaggaggatgtgaagagtaataagcgagtaatgagcagggag
agtgccataaaagccaaaagaagaagagtgttggattctgacagcgatcatgatggctct
gacgtagagttcaagcctgatgtgaaagaagcggcaagcagcgaggaagctagtagtggg
gtggatgaaaatgaatccactgacacagagacagacacagagagtgttgcagaaagtccc
ataaaagtcccttctaaacgtaagagaagagcgatgaacaagcctgctaaaaggagtagc
ttaggaaatggacgttctgaaacgcccaaaagagcagtaacagtttctttagaggccaag
tctaagctgacatcgtttgcagcacctgaaagttttgaatctcaagcaaatgcttgcagt
ggaggcattggtggcttcacaacatgggagcatgaaaagcttgattggctgcaggaaggg
aaaaagaaagacgcgcataggaagcggcagagcgaccctgattatgacccatgtactctg
tatgtacctgaggactatctgaacaagtgtacgccaggaatgcggaggtggtggcagctg
aaaagccaaaactttgatgctgtgattttctacaaagtcggaaaattctatgagttgtat
catatggatgcagtcactggtgtaaatgagctgggcctgatcttcatgaagggtacttgg
gcccattcaggttttccagaaactgcatttggcagattctctgatgttctagtgcagaaa
ggctacaaggtggcccgtgttgagcaaacagaaactcccgaaatgatggaaacgcgctac
aagtcaatggcccgcccaacaaaatttgataaggttgtacgccgagaaatatgcagaatc
atcaccaaaggaactcagacttacagcgttctggactgtgatccctctgagaaccataac
aaataccttctgtgtgttaaagaaaaagaagattcctccggacaacgtgtttatggggtc
tgctttgttgacacgtcggtgggcaagttctatgtaggccagttctcagatgaccgacac
tgttcgaggtttaggactttagtagcgcattacaccccggtgcaggtcctgtatgagaag
gggaacctgtctgtggacacacagaagatactgaagggctcacttgtttcttgcattcaa
gaaggactgatctctggttcccagttctggaatgcatctaaaacactaaaagtccttctt
gaaggagaatatttcaaggagaaacagaactctgaaaatggatgttctctgccctctgta
atcaaatctctgacttcagagagtgactcgctgggattaactcctggtgagaacagtgaa
ttagctttgtcagctcttgggggatgtgtcttctatctcaaaaaatgtctgattgatcag
gagctgttatcgctggcaaagttcgaggagtatgtccctgtggatattgatactgcaaga
actacaagtccaagtaatttctttgcgaaaaccgaccagcggatggtgctggatggagtc
accctgatgaacttggaagtcctgcaaaacagaaccaatggaaccacagaaggtactctg
ttggaaaggattgattcttgttgtacgccgtttgggaagcgactcctgaaacagtggctc
tgcgctccgctttgtaatcctaaatccatcaatgatcgtttagatgctgttgaggacctt
ctggcagtgccggataaaatgtctgaagttagtgagcacctgaagaaacttccggacctt
gaaaggctgctcagcaaaattcacagcattggatcaccactcaaaagtcagaaccatcct
gacagcagggccatcttttatgaagaaatcaaatacagcaaaaaaaaaattgctgacttt
ctgtctgcactggaggggtttaaagtaatgactgaaattgtcaatgtcatggaagaaatt
gccagtgacttcaaatctaaagtccttaagcagctagttacccgcaaagccaaaaatcca
gatggtcgcttcccagacttgagtgcggagcttaaaagatgggatactgcttttgatcat
aaccaggctcgaaagacaggagtgattactccgaaggtgggctttgaccccgattatgat
aaagcactacaggatattaaagctgttgaggaagatcttcacaagtacctagataagcag
cggaaactgcttggattcaaatccgtgctgtactggggggcaggcaaaaaccgataccaa
atggaaataccagaaagtgcaatatcacggaatttgcctgaggaatacgagttgaagtca
accaggaagggatataagcgttactggactaaggagattgagaagatgctggctgcaatg
cttaatgctgaagagcgcagagatgcagcactaaaagactgtatgaggcgcttgttttac
aacttcgataaaaatagcaaagactggcagacagctgtggaatgcattgctgtgttagat
gtcttgatgtcccttgctaactacagtcaagatggtgatggaccactgtgccgacctgta
attctactgcctgtggatagtgctcctcccttcctggaacttaaaaattcacgccatcca
tgcattacaaaaactttctttggggatgattttattccaaatgacatcgtgataggcagc
aaagatgaagacagcagtagtgaagcttcctgtgtgttagtaactggcccaaatatgggt
ggcaaatctacgctcatgagacaggctggcctcctggttataatggctcaactgggatgc
tatgtacctgctgaagcctgcaggcttacgccaattgacagagtatttacaagacttggt
gcctcggacagaatcatgtcaggtgaaagtacattcttcgttgaactgagtgagacttct
agcattctccagcatgcaacacagcattcccttgttcttgtggatgaactgggcagaggc
acagctacttttgatggaacagctatagcgagtgcagttgtgaaagaacttgcagagaaa
atcaggtgtcggactctgttctccacacactaccattcgctggtagaggattactctgac
aacgcggctgtgcggcttggccacatggcatgcatggtggaaaacgagagtgaagatcca
agccaggaaagaattactttcctgtataagttcattgaaggagcatgtccaaagagctat
ggcttcaatgcagcaagacttgctaatattccagaggaagttattcagaaggggcacaga
aaagcaagagagtttgaaaaaacaaccactgcactgagaatatttaggtacctgtgcatg
gtggtggatggtgcaacacgtgatgcgaatgctgtttcaaaacttactgctatgatcaat
catctttaa
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integrated database retrieval system
