Phalacrocorax carbo (great cormorant): 104041107
Help
Entry
104041107 CDS
T08596
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104041107 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcao03041
]
104041107 (PRPF40A)
Spliceosome [BR:
pcao03041
]
Complex A
U1 snRNP components
U1 related factors
104041107 (PRPF40A)
Complex B
104041107 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
104041107
NCBI-ProteinID:
XP_009498621
LinkDB
All DBs
Position
Unknown
AA seq
819 aa
AA seq
DB search
MGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGMMM
SHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQTTHPVVCAAQQTATTNSSVNEEHSKQKST
WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTK
ESRWAKPKELEDLEAMIKAEENSTKPEESTPTASAPAAAAEAANATTTATTAAETAAAAT
TTTAASAAAAAPEAEAAASSVVENESTGTAAAEEQGQATSAPAAQEQSGEAAANAADDSS
KQEASADAASKKEDDDAQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIIN
DPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYK
KAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANV
TYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRER
RRQRKNRESFQLFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFY
VEDLKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRATTLDAGNIKLAFNSL
LEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRDRFVKEPAFEDIT
LESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSESEDDDSHSKKK
RQRSESRSVSERSSSAESERSYKKSKKHKKKSKKRRHKS
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgggtcacccaggcatgccacattaccctcccatgggaatgcaccctatgggtcagaga
ccacccaatatgccgccagttccacacggtatgatgcctcagatgatgccccccatggga
ggaccaccaatggggcagatgcctgggatgatgcagtcagtaatgcccggaatgatgatg
tctcacatgtctcaagctgctatgcagcctacggttccgccaggggtgaacagtatggat
gcacaagtaggtgtaacacctcctggaactcagacaacacatcctgtagtttgtgcagcc
cagcaaactgccacaaccaacagttctgttaatgaagagcactctaaacagaaatctaca
tggacagaacacaaatcacccgatggaagaacgtattactataatactgaaacaaagcag
tctacgtgggagaagccagatgatctcaaaacacctgctgagcaattgttgtctaagtgt
ccctggaaagagtataaatctgattcgggaaagccctactactataattcccaaacaaag
gaatcgcgctgggcaaaaccgaaagagcttgaggatcttgaagcaatgattaaagctgaa
gaaaacagcacaaagcctgaagaatcaactccaacagcatctgctccagctgctgcggca
gaagcagcaaacgcaaccaccactgccacaactgctgctgaaactgccgcagctgctact
accaccactgctgcttctgcagcagcagcagcccccgaagcagaagctgcagcttcttct
gtggtagaaaatgagagtactggcacggctgcagctgaggaacagggacaggcaacttct
gcacctgctgcgcaggaacagagcggagaagctgcagctaatgcagcagacgactcttcc
aagcaggaggcttcagcagatgctgcctcaaagaaggaggacgatgatgcccaaccagtt
aaaaaaacctatacatggaatacaaaggaagaagcaaagcaagcgtttaaagaactgtta
aaagaaaagcgagtaccttccaatgcttcatgggagcaagctatgaaaatgatcattaat
gatcctagatacagtgctttggcaaaattaagtgaaaaaaagcaagcctttaacgcttac
aaagttcaaacagaaaaggaagagaaagaagaagcaagatcaaaatacaaagaagctaaa
gaatccttccagcgttttcttgaaaaccatgaaaagatgacgtctacaacaagatacaaa
aaagctgaacaaatgtttggggagatggaagtctggaatgcgatatctgagcgcgatcgt
cttgaaatttatgaagatgtcttgttttttctgtctaagaaagagaaggagcaagccaaa
cagttacgaaagaggaattgggaagctttgaagaacatactagataacatggctaacgtc
acttactgtaccacttggtcggaggctcagcagtatctgatggacaatcctacatttgca
gaagatgaggaacttcagaacatggataaggaggatgcactgatctgttttgaggaacat
atcagggcattggaaaaagaggaggaagaagaaaaacagaaaagcttgcttagagaaaga
aggcggcagcgtaaaaatagagaatcttttcagctatttttagatgaactgcacgagcat
ggacagttacattcgatgtcctcttggatggagttgtacccaaccataagctctgacatc
agattcactaatatgcttggtcaacctggatcaactgcacttgatcttttcaagttctat
gttgaagacttgaaagcacgttaccatgatgaaaagaagataataaaagatatcttaaag
gataaaggatttgtggttgaagtgaatacttcttttgaagattttgttacggtcatcagt
tcaactaaaagagctactactttagatgcaggaaatatcaagctggcttttaacagcctg
ctagaaaaggcagaagcccgtgaaagagagagggaaaaagaagaagctcgcaaaatgaag
cggaaagagtctgccttcaagagtatgttgaagcaagctactcctccaattgaattggac
gctgtctgggaagatatcagggatagatttgtgaaggaaccagcatttgaagacatcact
ctggagtctgaaagaaaaagaatatttaaagatttcatgcatgtactagagcacgagtgt
cagcatcatcattcaaagaacaagaaacattcgaagaagtctaaaaaacaccacaggaag
cgatcacgttctcgttcgggctcagagtcggaggacgatgacagccattccaagaagaag
aggcagcgttcggaatctagatcagtttccgagcgttcttccagtgcagaatctgagaga
agttacaagaagtcaaaaaaacacaagaaaaagagcaagaagagaagacataagtct
DBGET
integrated database retrieval system
