KEGG   Phalacrocorax carbo (great cormorant): 104041253
Entry
104041253         CDS       T08596                                 
Symbol
RFC2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
pcao  Phalacrocorax carbo (great cormorant)
Pathway
pcao03030  DNA replication
pcao03410  Base excision repair
pcao03420  Nucleotide excision repair
pcao03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pcao00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104041253 (RFC2)
   03410 Base excision repair
    104041253 (RFC2)
   03420 Nucleotide excision repair
    104041253 (RFC2)
   03430 Mismatch repair
    104041253 (RFC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pcao03032]
    104041253 (RFC2)
   03036 Chromosome and associated proteins [BR:pcao03036]
    104041253 (RFC2)
   03400 DNA repair and recombination proteins [BR:pcao03400]
    104041253 (RFC2)
DNA replication proteins [BR:pcao03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    104041253 (RFC2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    104041253 (RFC2)
Chromosome and associated proteins [BR:pcao03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    104041253 (RFC2)
DNA repair and recombination proteins [BR:pcao03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     104041253 (RFC2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    104041253 (RFC2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 RCF1-5-like_lid AAA_14 AAA_16 Viral_helicase1 AAA_24 Mg_chelatase AAA_11 DNAX_ATPase_lid AAA_assoc_2 MipZ AAA_19 nSTAND3 RuvB_N AAA_18 AAA_5 AAA_28 ABC_tran AAA_30 Rad17 AAA_25 AAA_23 NTPase_1 MeaB RNA_helicase SLFN-g3_helicase FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 104041253
NCBI-ProteinID: XP_009498782
LinkDB
Position
Unknown
AA seq 334 aa
TIKVLLDVLKRVRFHFYRVEKYRPVKLCEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGT
GKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIIL
DEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILA
RLLKIVEKENVPYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHP
LLVKEMIQHCINANIDEAYKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEI
GYTHMKIAEGVNSLLQMAGLLARLCQKTAAPAAS
NT seq 1006 nt   +upstreamnt  +downstreamnt
cactattaaagttttattagatgtgctgaagcgtgtgcggtttcacttttacagggtgga
aaaatacagacccgtgaaattatgtgaaatagttggaaatgaagatactgtgagcaggtt
ggaggtctttgcaaaagaggggaatgtaccaaatattataattgctggtcccccaggaac
aggtaaaaccaccagtatcctctgcttggctcgtgctctgcttggtcctgcattaaagga
tgctgttttggagctgaatgcctcaaatgacaggggcattgatgttgtgagaaacaaaat
caaaatgtttgcccagcaaaaggtcacacttccaaaaggtcggcataaaataatcatcct
tgatgaagcagacagcatgacagatggagcacagcaagcattgagaagaacaatggaaat
ttattccaaaacaacgcgcttcgcacttgcgtgcaatgcctctgacaaaatcatagaacc
tattcagtcccggtgtgcagtgctgcgttacaccaagctgacagattcacaaatccttgc
aaggctactgaagattgttgagaaagagaatgtaccatatacagatgatggactagaagc
cattatcttcacagcccaaggagatatgagacaggcattaaacaacttgcagtccacata
ttctggatttggctttataaacagtgaaaatgtctttaaggtatgtgatgagcctcatcc
tctgcttgtgaaagaaatgatacaacactgcataaatgcaaatattgatgaagcgtacaa
gattcttgcccacctgtggcgacttggatactctccagaagatgtgattggcaacatctt
ccgggtgtgtaaaacctttcaaatgccagaatatctgaaactggaatttatcaaggaaat
cgggtacactcatatgaagatagcagaaggtgtgaactcgcttttacaaatggctggact
gctggccaggctgtgtcagaagaccgcagcccccgcagcaagttaa

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