Phalacrocorax carbo (great cormorant): 104042162 Help Entry 104042162         CDS       T08596                                  Symbol PDCD11 Name (RefSeq) protein RRP5 homolog   KO K14792   rRNA biogenesis protein RRP5 Organism pcao  Phalacrocorax carbo (great cormorant) Brite KEGG Orthology (KO) [BR:pcao00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03009 Ribosome biogenesis [BR:pcao03009]     104042162 (PDCD11) Ribosome biogenesis [BR:pcao03009]  Eukaryotic type   90S particles    Other 90S particles     104042162 (PDCD11) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  S1_RRP5 S1 Spt6_S1 OB_RRP5_4th HAT_Syf1_CNRKL1_N HAT_PRP39_N Suf HAT_PRP39_C TPR_14 HAT_Syf1_CNRKL1_C OB_RRP5 TPR_19 TPR_15 ARM_TT21 TPR_12 TPR_CcmH_CycH ARM_TT21_5th TPR_16 TPR_Slam Motif Other DBs NCBI-GeneID:  104042162 NCBI-ProteinID:  XP_009499859 LinkDB All DBs Position Unknown AA seq 1837 aa AA seqDB search MASMEENFPRGGIQKKSTEGKTPNPKLERDNLFDIHHEEQSRKRKRSQRDQGKQKKVKAD KMATAKDNVVNIEPLTIEALCEGMLFLGCIKEVSDYELVVSLPNGLSGFVPVTQISDAYS KMLSKQVAEGELLEDLNSLLDMYSPGTLVRCIVTSVERSADGRRSIKLSIDPKKVNKGLT ASALASGMLLSGFVSSVEDHGYLIDIGVSGSHAFLPRQKAQNYIKAVKRGSDLKIGQNLN CVIVEVKNEGRVVCLSIDRSEVAASLATERQNWTLSNLLPGLVVKARVQKVAPLGIKVSF LSSFTGIVDFMHMDPEKSMNYSPDQVVKACILSVHPTSKVVRLTLRQAFLHPGGSPNQLS NDRMGAVVEESTVKAFYKQFGAVFELDDGTLAFARLKHLSKNRKSFKPGAFKTGCKHKCR IIDYSLMDEMCIVSLKYQIIEARFLQYQDIHTGDVVQGKVFALKPIGMQVKVTDGIKGLV PSMHLADVILKQPEKKYNIGDEVRCRVLECNPAGKKLILTLKKSLVQSKLPVLSNYEDAK PGLVTHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHEGQVVKVMVLKCE PQQERLLLSFRLSSKPAPEDKKECTPKKKQEVKYQIGQMVDVKVLKKKDNGLEVSVLEDE GNVIASIPTVHLSDFVANCKLLWHCLQEGDVLPRVMCLSDKGEHIILSRKSAVISAVQED QVVRSFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQ TVIAKVMSIDEEKQRVLLNLKVSECSSGDSAAESFALLNQYFKEMKEIRNLLRRRGEPSM AQSLCKLMPGKELQLVVQDMKEDGSALFSGSCVTGLTVTATRHHLGDKNIVPGEKTKALV LHVDALTSKVYVSLREELLKQRAKQRLTENSQHSAIVQHIEEEFAIVSLETGQLAAIPIA SHFNDTFRFDSEKLKVGQTISATLKVVKVNEHGVLLAIQGPAKKNVFVRVRNESETALEE MLAAVKHSLSLGDIVTGTVKSIKPTHVTVAIDDKLTGSIHASRILDEVPIGSFPTYTLKA GQKVTARVIGGRDVNTHRYLPITHPHFTRSIPELSIRPSEIEGKVTAMLDLKKDNAPKKL GLYNIGQTVTCFVKKYNILKNWLEVEVAPDVRGRVPHLLLSLNTKVLKHPEKSFKNGQAI SATVTGTDVTETNLCLSLTGIQSLEQGTVTVGMVTKVTPHIGLTVALPGGKTGKVSIFHL NDTYMENPLGDFKVGKIVRCYILSNENGKIQLSLRQSRLNPKSNSKVDDVEITCVKDVKK GQLVRGYIKSIAPSGVFFGLSTSLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLG INGKEKHIELSLLPQDTGMPSVLPESLGLPRYDAEEEKREADHQEKREELKLKTKRRRGN SESEQEAKPKKRKICPADENDSGIEVYYREEEEDDQEEEAARKKSKIKKPGEAPRLQVST GFTWDEDMNAVDIPVLNQKEESSESEEEEDPQSKLKKQTKKEKELEKQRKEKELCKLEAA LMDPSRQPQSADDFDRLVLSSPDSSILWLQYMAFHLQATEIEKARAVAERALKTICFREE QEKLNVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYANSEKYKQAEELY HTMLKRFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLEFRF GDPEHAKALFESTLNSYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLSLAPKKMKFF FKRYLDYEKKFGTPESVLAVKRAALEYVETKSSLADT NT seq 5514 nt NT seq  +upstreamnt  +downstreamnt atggcatccatggaagaaaactttcctcgagggggcatccagaaaaaatctacagaggga aaaacccccaatccaaaattagagcgggacaatttgtttgatattcaccatgaagaacaa tcccggaaaagaaaaaggagccaaagggatcaaggaaagcagaaaaaggtcaaggcagac aaaatggctactgctaaagacaatgttgtgaatattgaaccactcacgattgaggcactc tgtgaggggatgctgttccttggttgtataaaagaggtcagtgactacgagctagtcgtc agcttgcccaatggactttcaggatttgtgccagtcacgcagatcagtgatgcttacagc aaaatgttgagcaagcaggtggctgaaggagaactcctggaggacttgaattcgctcttg gacatgtattctccagggacactggtcaggtgcattgttaccagtgttgagagaagtgct gatggacgtcggagtatcaaattgtcaatcgaccctaagaaggtcaataagggtctaact gcttcagcgctagcatcaggcatgctgctctctggctttgtgtcaagtgtggaagaccat ggctaccttattgatattggagtcagtgggagtcatgctttcctgcctcgtcagaaagcc caaaattacatcaaagcagtcaagagagggtctgacttgaaaataggccagaacctgaac tgtgtcattgtggaagtaaagaacgagggaagagtggtctgtttgtccattgatcgatca gaggttgctgcatcccttgcaacagagcgacagaactggaccctctctaatttattacca gggctggtggtgaaagctcgcgtgcagaaggtggccccactcgggatcaaagtgagcttt ctctcttccttcactggcattgtggatttcatgcacatggacccagagaaatccatgaac tattctccagatcaagtggtgaaagcttgcatcctctctgtccaccccacctccaaggtg gtgcggcttactctacggcaggccttcctccaccctgggggatccccaaaccagctctcc aatgatcgcatgggggcagtggtggaagagtcaacagtgaaagctttctacaagcagttt ggtgctgtctttgagcttgatgatggcactcttgcatttgcacggttgaaacatctttca aaaaacagaaaatcctttaaacctggggcatttaagacaggatgcaaacataaatgtcgg atcattgactacagcctgatggatgaaatgtgtattgtatctctgaagtatcagattatt gaagcacggtttctgcaataccaagatatccatacaggggatgtggtgcagggcaaagtg tttgcattgaaacccattgggatgcaggtgaaagtgactgatgggattaaagggctcgtg ccatccatgcatcttgctgatgtgatcctgaagcagcctgagaagaagtacaacatagga gatgaagtcaggtgtcgggtgttagagtgcaatcctgcaggaaaaaagctgatccttact ctaaagaaaagtcttgtccaatcaaagcttccagtcctctccaattatgaagatgcgaaa ccaggtctggtcacacatggctttgtggtgtgcgcaagggagtttggctgcattgtgaag ttctacaatgatgtcaaaggtctggtacccaagaatgagctgagctcagaacccatatct tgtccagataaagtcttccatgaaggccaggttgttaaagtaatggtcttaaaatgtgag ccccagcaggaaagacttttgttgtccttcaggttatcaagcaagcctgccccagaagac aaaaaggaatgtactccaaagaagaaacaggaagtgaaatatcaaataggacagatggtt gatgtgaaagtcttgaagaagaaggataatgggctagaggtttctgtcttagaagatgaa ggcaatgtaatagcctcgattcccacagtacacctctctgactttgttgcgaactgcaag ctcctgtggcattgtcttcaagagggagatgtcctgcccagagttatgtgcctaagtgac aagggagagcacattatcttgagcagaaagtctgcagtgatttctgctgtacaggaggac caagttgtgagaagtttctctgaaatccagcctgggatgctgttgactggttacgtcagg aatgtgatgccctttggagtgtttgtggagttcccttttggtgtgacaggactggcgccc aaagtgagcatgagtgacaaatttgtgacggacaccaaggaccactttgtggtgggacag actgtgattgcgaaggtgatgagcattgatgaggagaagcagcgtgtgctcctcaatctg aaggtgtcagagtgcagctcaggcgattctgctgcagagagttttgccctgctgaatcaa tatttcaaggaaatgaaagaaatcaggaacttgttgagaagaagaggggagcccagcatg gcccaaagcctttgtaagctgatgcctgggaaggagctgcagctggttgtgcaggatatg aaggaggacggctcagcactgttcagtggcagctgtgtaacaggcttgactgtaacagcc actcgccaccatctgggagacaaaaatattgttcctggtgagaaaaccaaagcattggtt cttcatgtggatgccctcacatccaaggtgtatgtttctcttcgggaagaactgttaaaa caaagagccaagcaacggctcacggagaactcccagcactctgccattgtgcagcacata gaagaggagtttgctatcgtgtctttggaaacaggccagctggcagccatccccatagcc tctcacttcaatgacaccttccgctttgactcagaaaaactgaaggtgggacaaacaatc tctgcaaccttaaaagtagtgaaggtgaatgaacatggagtcttgttagccatacaaggc ccagcaaagaagaatgtttttgtaagggtccggaacgaatctgagacggcattagaagag atgcttgctgctgtgaaacactcgctttccctgggggatattgttactggtactgttaaa tcaatcaaaccaacccatgtcacagttgctattgatgacaagctgacaggttcaatccat gcatcccggattctggatgaagtgcccataggctcttttccaacatatactctgaaagct ggacagaaggtgactgcccgagtcattggaggcagagatgtgaatactcacaggtacctg cctatcacccatccacacttcacacggtccattccagagctcagcattcgaccaagcgaa atagaagggaaagtcacagcaatgctggaccttaaaaaagacaatgcccccaagaaactt ggactctacaatattggacagacagttacctgttttgtgaaaaagtataacatcctcaaa aattggctggaggtagaagtcgcccctgacgttcgtggaagagttcctcatctgctgctg tctctgaacaccaaggtcttgaaacatccagaaaagagcttcaaaaatggccaggcaata tcagctacagtgactggaacagatgtcacggaaacaaacctctgcttgtcactcacagga attcagtcactggagcagggcaccgtcactgtaggaatggtaacaaaggtgactccacac attggtttgaccgttgcgctgccaggtgggaagactggcaaagtcagcatctttcacctg aatgatacttacatggagaatcctctgggtgacttcaaagttgggaagattgtcaggtgt tacatcctctccaatgagaatggcaaaatccagttatctctccggcaatcccggctgaac ccaaagagcaacagcaaagtggatgatgttgaaataacatgtgttaaggatgttaaaaaa ggccagctagtgagaggctacatcaaatcaattgctccatcaggtgtattctttggcttg tccacttctcttctgggccgaatcctgttccagaatgtttccccttactttgtacagaaa cactccttatatgaaaagtacctgcctgaaggaaagctgctgactgccaaggtgcttggt ataaatggaaaagaaaaacatattgagctctctctcctgccccaggacactgggatgcca agtgtcttgcctgaatccctaggcctaccacgatacgatgcagaggaagagaaaagagag gcagatcatcaggaaaagagagaagagcttaagctgaagacaaaacggagaagaggaaac tctgaaagtgagcaggaggctaagccaaaaaagaggaagatctgcccagcagatgaaaat gacagtggaattgaggtatactaccgggaggaggaggaggatgaccaggaggaagaggca gctagaaagaaatccaagataaagaaacctggtgaagctcccaggctgcaggtttccacg ggcttcacctgggatgaggacatgaatgcagtggatatacctgtgctgaatcagaaggaa gagagctcagagagcgaggaggaggaggatccgcagtcaaagctcaagaaacaaacaaag aaggagaaagagctagaaaagcagaggaaggagaaggagctctgcaaattagaggcagcc ctgatggaccccagtcgacagccccagtcagcagatgattttgaccgcctggtgctgagc agtcccgacagctccatcctctggctacagtacatggctttccacctccaggctacagag attgagaaggccagagctgtggcagagagagcacttaaaacaatctgcttcagggaagaa caggagaagctgaatgtttgggtagctctgctgaacttggagaacatgtatggtactgag gagacactgatgaaggtttttgagagagctgttcaatacaatgaacctttgaaagtcttc cagcatctatgtgacatctatgccaattctgagaagtacaagcaagcagaagaattgtac cacacaatgctgaagcgtttccgtcaggagaaatctgtgtggctgaaatacgcctctttc ctcctgaagcaaggccagactgaggctacacataggcttttggagcgtgctctcaaggct ttgcccaccaaagaacatgtggatgtaatttcaaggtttgcacagctggagttccgtttc ggggacccagaacatgccaaggccctctttgagagcaccctcaacagctatcccaagcgg acagacatctggtccatctacatggacataatgatcaaacatggcagccagaaggaagta cgggacatctttgagagagtcatacatctaagcttggcaccaaagaagatgaaattcttc tttaaacgctacctggattatgagaagaaatttggtacaccagaaagtgtcctggctgtt aaaagagcagcacttgagtatgtggagaccaagagttcccttgctgacacctaa

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