Phalacrocorax carbo (great cormorant): 104042479 Help Entry 104042479         CDS       T08596                                  Symbol RFC1 Name (RefSeq) replication factor C subunit 1   KO K10754   replication factor C subunit 1 Organism pcao  Phalacrocorax carbo (great cormorant) Pathway pcao03030   DNA replication pcao03410   Base excision repair pcao03420   Nucleotide excision repair pcao03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pcao00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     104042479 (RFC1)    03410 Base excision repair     104042479 (RFC1)    03420 Nucleotide excision repair     104042479 (RFC1)    03430 Mismatch repair     104042479 (RFC1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pcao03032]     104042479 (RFC1)    03400 DNA repair and recombination proteins [BR:pcao03400]     104042479 (RFC1) DNA replication proteins [BR:pcao03032]  Eukaryotic type   DNA Replication Elongation Factors    RFC (replication factor C)     104042479 (RFC1) DNA repair and recombination proteins [BR:pcao03400]  Eukaryotic type   SSBR (single strand breaks repair)    MMR (mismatch excision repair)     RFC (replication factor C)      104042479 (RFC1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RFC1 BRCT AAA PTCB-BRCT AAA_14 AAA_22 Rad17 BRCT_2 AAA_5 AAA_30 RuvB_N AAA_16 AAA_18 RNA_helicase AAA_17 AAA_33 AAA_7 nSTAND3 NTPase_1 AAA_19 Motif Other DBs NCBI-GeneID:  104042479 NCBI-ProteinID:  XP_009500228 LinkDB All DBs Position Unknown AA seq 1161 aa AA seqDB search MATAPGGSDTNQDIRKFFGVIPPGKQQKRETVKKSEKIKNGEEPSSGKKKGKEAKVGNSP SEDDSRPKRTNKKKRIIYDSDSEEEVQSVKKSKKTPEKKAATSKLGKVRKQDPVVYISET DEEDDFVNKRISLKPKENGTSAIGYPGTTTVIKEDVKPQAKSKPLSPVKQTPTSALDYFG TSSVQRSEKKLVASKRKEPSQNRDSTLDDEAIARQLQLEEDSELERQLHEDEEFARTLAM LDETPQKKKARKDSGGEQTVLSTKSSPNVTKRYKQLEGGEATDSTGEAKSYTAKQQTKSE RSKGSRLSPQSSDGKIARELTGKTTPLKPSSKLVSLKQKEETAEKERGSASKEKTTSGKE EKTTPKKEKISPKKAESVSPEDSEKKRINYQAYRSFLNREGPKALGSKEIPQGAENCLEG LTFVITGVLECIERDDAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLGTKV IDEDGLFDLIRTMPGKKSKYELAAETEAKKVESRPKRTPQKAEAGKRNFSPFKREADNKK YKSTPEKGDTVTSVKKETTAVRKLMDFKRQTVEKKEAPKPKENLVSEVNEDGTERLLWVD KYKPVSFKAIIGQQGEQSCANKLLRWLRNWHKNTLEDGQAKTNKTGGKDDGTGFKAALLS GPPGVGKTTTASLVCKELGYSYVELNASDTRSKNSLKEVVAESLNNTSIKDFCSGTSSSV SGKHVLIMDEVDGMAGNEDRGGIQELIGLIRHTKIPIICMCNDRNHPKIRSLVHYCFDLR FQRPRLEQIKGAMMSIAFKEGLKIPPPAMQEIILAANQDIRQVLHNLNMWCAKDKSLTYD EAKMDGSRAKKDIKLGPFDVVRKVFATGEEASRMSLIDKSDLFFHDYSLAPLFVQENYIH VKPAAAGGNLKKHLVLLSRAADSICDGDIVDKQIRSKQNWNLLPTQAIYASVLPGELMRG HMSQFPVFPTWLGKFSSTGKHDRIIQELAMHMSLRTQACKRTVNMEYLSYLRDALVQPLK EFGADGVQEAITFMDSYCLMKEDIENIMEISTWGGKPSPFSKLDPKVKAAFTRAYNKEAH LTPYSLNSAKTSKRQSGSAVTLELNEDLNVEEIQSDEDEQDTVESDAMIKQKKVKSSKPP KREKNEETTKKEGKRKEKTRQ NT seq 3486 nt NT seq  +upstreamnt  +downstreamnt atggctactgcccctggaggtagtgatactaaccaggatatccggaaattctttggtgtt atacctcctggaaagcaacaaaaacgtgagactgtgaaaaagagtgaaaaaatcaaaaat ggtgaagaaccttcaagtggaaagaaaaagggaaaggaggctaaggtgggtaattcaccc agtgaagatgattccagaccaaagcggacaaacaagaaaaaaagaataatatacgattca gattcagaagaggaggtgcagtcagtgaaaaaatccaagaagacacctgagaaaaaagca gctacttcaaaacttggtaaagttcgaaagcaggatcctgttgtttatatttcagagaca gatgaagaagatgactttgtcaataaaagaatttccctgaaaccaaaggagaatgggaca tcagcaatcggttatccaggaacaactacagtgataaaagaagatgtaaaaccacaagct aaaagcaaaccattatctccagtgaaacagactcccacctcagcacttgactactttggg acaagtagtgtccagcgatcagaaaagaaactggtagcaagcaaaaggaaagaaccttca caaaacagagacagcacactagatgatgaggccattgctaggcaactgcagcttgaagaa gattcagagctggagagacagctacatgaagatgaagaatttgctagaacgttggccatg ttggatgaaacaccacagaagaaaaaggctcggaaagattcaggaggagagcaaacagta ctgagcaccaagagcagtcctaacgtgacaaaaagatataagcagttggaaggaggggaa gcaacagactcaacaggtgaagccaagagttacactgccaagcagcaaactaaatctgaa cgttcaaaaggctctcgtttatccccacaatcatctgatggtaaaatagcaagagagttg acaggtaagaccacgccgttgaaacccagctctaagcttgtgtctctgaaacaaaaagaa gagactgctgaaaaggagagaggttcagcatcaaaagaaaaaactacttcagggaaagaa gagaagacaacaccaaagaaggagaaaatttctcccaagaaggctgagtctgtaagtcct gaggactctgaaaagaagcgaattaattaccaagcctaccgaagcttcctgaatcgtgag ggtccaaaagcactgggttccaaagagatacctcagggagctgaaaactgcttggagggc ctgacattcgtaattacaggcgtcctggagtgtattgaaagagatgatgccaagtctctg atagaacgttatggaggaaaagtaactggcaatgtcagcaagaagacaaactatctggtt atggggcgagactgtggccaatctaaatgtgaaaaggcatcaactttagggacaaaagtt attgatgaggatggcctgtttgatcttattcgaactatgccaggcaaaaaatccaaatat gagctggcagctgaaacagaggcaaagaaagtggagtcaagacctaaaaggacaccacaa aaagctgaagctggaaaaaggaattttagccccttcaaaagggaggctgataataaaaaa tataagtctactcctgaaaaaggagatacagtcacatctgtcaagaaagaaaccacagcc gttcgaaagcttatggactttaaacggcagactgtagagaagaaagaagctccaaaacca aaggagaacttggtttctgaggttaatgaagatggaacagagcgattgctatgggtagat aaatacaagcctgtgtcttttaaggcaataattggacagcagggtgagcaaagctgtgcc aataaactgctccgatggctccgaaattggcacaagaataccttggaagatggacaagca aagaccaataaaactggaggcaaagatgatggtactggttttaaagcagcattactttct ggtccacctggagttggtaaaactactacagcttctttggtttgtaaggaactggggtat agctatgtggagctgaatgccagtgacactcgcagtaagaacagtctaaaggaagtagtt gctgaatcgcttaacaacaccagcatcaaagacttctgttctggcacatcctcatcagtt agcgggaaacatgtattgatcatggatgaagtggatggtatggcaggcaatgaagacaga ggagggattcaggagttgattggtttgataagacacacaaagatacccatcatctgtatg tgtaacgatcgcaaccatcctaaaattcgttccttggtccactactgttttgatctccgt tttcagagacctcgtctagaacagattaagggtgccatgatgtctattgcctttaaagaa ggtttaaaaattccaccacctgctatgcaagagataattctggcagcaaatcaggacatc agacaggttttacataatcttaatatgtggtgtgcaaaagataaatcattaacttatgat gaggctaaaatggatggcagcagagccaaaaaggatatcaaactgggcccttttgatgtt gtccggaaggtttttgctactggcgaggaggcttctcgtatgtctcttatagacaaatcg gatcttttcttccatgattattccttagcacctctctttgtgcaagagaactacatacat gtgaaaccagctgctgctggaggaaatctgaaaaaacacttggtgctcttgagtagagca gctgacagtatatgtgatggtgatatagtagacaaacagatccgtagcaagcaaaactgg aaccttcttccgacgcaggctatttatgcaagtgttctcccaggggagctgatgagaggt cacatgtcccagtttcctgtctttcccacctggctggggaagttttcatccacaggcaaa catgatcgtatcattcaagaactggcgatgcacatgagcctcagaacccaggcatgcaag aggacagtaaacatggagtatttgtcgtatttgcgggatgcgcttgtccagcccctgaaa gagtttggagcagacggtgtacaggaggctataacgttcatggactcttactgcttgatg aaagaagatattgaaaatatcatggaaataagcacatggggaggcaaacccagtcctttt tcaaagctggatcccaaggtcaaagcagcttttacacgtgcctacaacaaggaggcacat ctgactccatattcacttaattctgccaagacatctaaaaggcagtcaggatctgcggtg accttagaactgaatgaagacttgaatgtggaggagatccagtctgatgaggatgagcaa gatactgtcgaaagtgatgcaatgattaagcaaaaaaaggtgaagtcttccaagccacca aaaagagagaaaaatgaagaaacaacaaaaaaagaagggaaaagaaaagagaaaacaaga caataa

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