Phalacrocorax carbo (great cormorant): 104042545
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Entry
104042545 CDS
T08596
Symbol
NUP54
Name
(RefSeq) LOW QUALITY PROTEIN: nucleoporin p54
KO
K14308
nuclear pore complex protein Nup54
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104042545 (NUP54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104042545 (NUP54)
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
104042545 (NUP54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup54
Nup54_C
XhlA
Motif
Other DBs
NCBI-GeneID:
104042545
NCBI-ProteinID:
XP_009500309
LinkDB
All DBs
Position
Unknown
AA seq
569 aa
AA seq
DB search
MPVLSVVMEKYFSFSFLXPTFYLELMLPCSFSASRLSGFGGLETTNSTASGFNFGGFGLT
ANPAVNFNIGNFGVSTTSTPPFNFGNSLASAGAFGGFGTTTTTTGPAFSFSAPTNTGTSG
LFGATQNKGFGFGTSFGTGTGTGLGSGLGTGLGFGGFGTQQQQTTLGSGLFSQPAQTPAP
SXXXXXXXXXXLGDERDAILAKWNQLQAFWGTGKGYFNNNIAPVEFTQENPFCRFKAVGY
SLMPNNKDEDGLVVLVFNRKEIDIRSQQQQLVESLHKILGGNQTLTVNVEGVKTMPDDQT
EVIIYVVERSPNGTSRRVPATTLYAHFEQANIKSSLQQLGVSLSMARTELSPAQVKQLLQ
NPPAGVDPIIWEQAKVDNPDPDKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDI
SELQKNQTTTMAKIAQYKRKLMALSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQ
CELNAPTQFKGRLNELMSQIRMQNHFGAVRAEERYYIDADLLREIKQHLKQQQEGLSHLI
SIIKDDLEDIKLIEHGLNESIPIRGGVFS
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtcttgtccgtggtgatggaaaaatattttagcttttctttcctgnaacctacc
ttttacttagaactaatgttaccttgctctttttctgcttcccgcttgtcaggatttggt
gggcttgaaactacaaactccaccgccagtgggtttaattttgggggtttcggattaact
gctaatcctgcagtgaattttaatattgggaatttcggtgtttccactacctcaactcca
ccattcaattttggtaacagtctggcaagtgcaggtgcgtttggaggatttgggacaact
accaccaccacaggaccagcatttagtttttctgctcccaccaatacaggcaccagcgga
ctctttggtgctacccagaacaaaggctttggatttggtactagttttggcacgggaact
ggaactggcttgggtagcgggttgggaactgggctgggctttggaggcttcggtacccag
cagcaacagaccacactaggaagtggtttgttcagccagcctgctcagacacctgccccg
tcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaggagatgagagagatgctattctg
gcaaaatggaaccagcttcaggccttctggggaacaggcaaagggtacttcaacaataac
attgctccagtggagttcacgcaggagaaccccttttgcagatttaaggctgtgggttac
agtttaatgcccaacaacaaagatgaagatggcctcgtggttttggtctttaacagaaaa
gaaatagatattcgaagccagcagcagcagcttgtagaatcactacacaaaattctgggc
ggaaaccagaccctcactgtcaacgtagaaggtgttaaaacgatgcctgatgaccagaca
gaagtgatcatttacgttgttgagcgttcacccaacggcacttcgaggagagttcccgca
acgaccctctatgcccactttgaacaagccaacataaaatcatccctgcagcagctgggg
gtcagcctctccatggccagaacagagctttccccggcacaagtcaaacagcttctgcag
aaccctcctgccggtgttgatcctatcatatgggaacaagccaaagttgataatcctgat
cctgacaagcttattcctgtgccaatggtgggtttcaaggaactgttgagaagattgaag
gtccaagatcagatgaccaaacagcatcaaactcgtttagacataatatcagaagatatc
agtgagctgcagaaaaaccaaacgacaactatggcaaaaattgcacagtacaaaaggaag
ctgatggcgctttcgcacagaacgttacaggtgttaataaagcaggagatccaaaggaaa
agcggttatgcgattcaagcggatgaagagcagcttcgtgttcagttggatacaattcag
tgtgaacttaacgcgcctacgcagttcaagggcaggctgaatgagctcatgtcccaaatc
aggatgcaaaaccactttggtgcagtgcgggctgaagagcgctattacatagacgcagac
ctcttaagggaaatcaagcaacatctgaagcagcagcaagaaggtctgagtcacctgatc
agcattataaaggatgacttggaggacatcaaacttatagaacatgggctgaacgagagc
attcccatcagaggaggagtcttcagttga
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integrated database retrieval system
