Phalacrocorax carbo (great cormorant): 104042548
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Entry
104042548 CDS
T08596
Symbol
PABPC3
Name
(RefSeq) polyadenylate-binding protein 3
KO
K13126
polyadenylate-binding protein
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03015
mRNA surveillance pathway
pcao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104042548 (PABPC3)
09123 Folding, sorting and degradation
03018 RNA degradation
104042548 (PABPC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104042548 (PABPC3)
03041 Spliceosome [BR:
pcao03041
]
104042548 (PABPC3)
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104042548 (PABPC3)
mRNA cycle factors
Stress granule specific factors
104042548 (PABPC3)
Spliceosome [BR:
pcao03041
]
Complex C
Other components
Complex C specific factors
104042548 (PABPC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RBD_RDR6
RRM_3
POP1_C
Motif
Other DBs
NCBI-GeneID:
104042548
NCBI-ProteinID:
XP_009500315
LinkDB
All DBs
Position
Unknown
AA seq
627 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP
TYYAPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHVAPAGNAPAARGLPAA
AQRVGVGAAAQNLAPRPPVAAPAXXXXXXXXXXXSPHPAVQPLQAPQPAVHVQGQEPLTA
SMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKV
EEAVAVLQAHQAKKEAAQKVGVVAATS
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaacacggccgccagcagttacccgatggcgtcactgtatgtgggtgacctgcacccc
gatgtcaccgaggccatgctctatgagaagttcagccccgctgggcccgtcctctcgatt
cgggtctgcagagatatgatcacccgccggtcccttgggtatgcctacgtcaacttccag
cagccagcagatgctgagcgtgccctagataccatgaattttgatgtgatcaaaggaaaa
cccattcgcatcatgtggtctcagagggacccctccttgaggaagtcaggggttgggaat
gtcttcattaagaacctggacaaatccattgataacaaggcactttatgacacattctca
gcgtttgggaatattttgtcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcatttgtgcactttgagacccaggatgctgcagatagagccatcgagaagatgaacggc
atgctgctaaacgaccgcaaagtatttgttgggagattcaagtctcgtaaagagagggag
gctgaattgggagccaaggcaaaggaattcaccaatgtttatattaaaaactttggggat
gacatggatgatgaaagactaaaggagctcttcagcaaatatggtaaaactctgagtgtt
aaagtgatgacagaccccactggaaaatcaaaaggctttggctttgtaagctttgaaaag
catgaagatgctaacaaggcagtagaagaaatgaatggaaaggatatcaatgggaaaatg
gtatttgtaggccgagcacagaagaaggtcgagcgccaggcagagctgaaacggaagttt
gaacagctaaaacaagagagactcagccggtaccagggtgttaacctgtacattaaaaac
ctagatgacactatagatgatgaaaaactgaggaaggagttttcaccttttgggtcaata
acgagtgccaaggtgatgctggaagatggacggagcaaagggtttggctttgtctgcttt
tcctctccagaggaagctacgaaagcagtgacagagatgaatgggcgaattgtgggctca
aagccgttgtatgttgcccttgcacaaaggaaagaagagcgaaaggcccatctaactaac
cagtacatgcaacgcattgctgggatgagagccttgcctgccaacacaattattaatcag
ttccagcctgctgctgggggatatttcatgcctgctgtgccccaggcgcagagcagaccc
acttactatgcacccaatcagatgacgcagatgagacccaacccacgctggcagcaagga
ggaagacctcaaggcttccagggaatgccaaatgccatgcgccagtctggaccacggcca
gcactgcgccatgtggcccctgccggcaatgctccggccgctcgtggcctccctgccgct
gcccagcgagttggcgttggcgctgcagcgcagaatttagctcctcgtccgcctgtagct
gcccccgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagcccacacccagctgta
cagcctttgcaggcacctcagcctgcagtacatgtgcagggacaggaaccgctaacggcc
tctatgctggctgctgcccctccccaggagcagaagcagatgctgggagaacgcttgttc
cctctgattcaagctatgcaccccagccttgcagggaagatcacaggaatgctgctagag
attgacaactcagagctgctgcacatgctagagtctccagagtccctccggtcaaaggtg
gaggaggctgttgcggtgttgcaggctcatcaagccaagaaagaagctgcccagaaggtg
ggcgtggttgctgctacctcttaa
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