Phalacrocorax carbo (great cormorant): 104042616
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Entry
104042616 CDS
T08596
Symbol
NOTCH1
Name
(RefSeq) LOW QUALITY PROTEIN: neurogenic locus notch homolog protein 1
KO
K02599
Notch 1
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
104042616 (NOTCH1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF
hEGF
Ank_2
Ank
Notch
EGF_TEN
NOD
Ank_5
Ank_3
Ank_4
NODP
EGF_CA
cEGF
EGF_3
EGF_2
Motif
Other DBs
NCBI-GeneID:
104042616
NCBI-ProteinID:
XP_009500385
LinkDB
All DBs
Position
Unknown
AA seq
1632 aa
AA seq
DB search
QMCEIDINECVKSPCRNGAICQNTNGSYHCACRTGFTGRNCDTDIDDXXPDPCHNGGSCS
DGIGTFFCECLAGFRGPKCEEDINECASNPCKNGANCTDCVNSYTCTCPSGFSGIHCENN
TPDCTESSCFNSGTCVDGINTFTCICPPGFTGSYXXXDINECDSKPCLNGGMCQDSYGAY
KCTCPQGYTGLNCQNLVRWCDSSPCKNGGKCWQTNNLYRCECNSGWTGLYCDVXXXXXXA
ARXVPAMCTASQGQGIDVAHLCRNSGLCVDTGNTHFCRCQAGXEEQVDECSPNPCQNGAT
CTDYLGGYSCECVAGYHGVNCSEEINECLSHPCQNGGTCIDLINTYKCSCPRGTQGVHCE
INVDDCSPFFDPVTLGPKCFNNGKCTDRVGGYSCICPPGFVGERCEGDVNECLSNPCDAR
GTQNCVQRVNDYKCECRPGYAGRRCDTVVDGCKGKPCRXGGTCAVASNTGRGFICKCPPG
FVGATCENDSRTCGNLHCLNGGTCISIHKSSKCMCTPAFTGPECQYPASSPCTSNPCYNG
GTCEFFSDASPYYQCHCPANFNGLNCHILDFDFQGGIGQDIIPPKIEEKCEIAVCAGYAG
NKICDGKCNNHACGWDGGDCSLNFNDPWKNCSQSLQCWKYFNDGKCDSQCNNAGCLYDGF
DCQKYEGQCNPLYDQYCKDHFSDGHCDQGCNNFECEWDGLDCANNMPEKLADGTLVVVVL
ITPDNLKNNSFNFLRELSRVLHTNVVFKKDPKGEYMIFPYYGNEEELKKHYIKRSTEDWS
DMSSAVINKVKSSLYSRTGRRQKRELDQMDIRGSIVYLEIDNRQCIQSSSQCFQSATDVA
AFPGGLXXXXXXXKIEAVKSETAEPTKNSQLYPMYVVVPLVLLAFIGVGVLLSRKRRREH
GQLWFPEGFKVTESSKKKRREPLGEDSVGLKPLKNASDGTLMDDNQNEWGDEETLDTKKF
RFEEQAMLPDTDDQTDHRQWTQQHLDAADLRISSMAPTPPQGEIDADCMDVNVRGPDGFT
PLMIASCSGGGLETGNSEEEDDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA
AKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA
RLAVEGMLDDLINCHADVNAVDDLGKSALHWAAAVNNVEAAVVLLKNGANKDMQNNKEET
PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPP
LHNGPLGEKNALPPPLCAPSGYIGNLKPAVQGKKARKPSTKGLSCNGKDAKDLKARRKKS
QDGKGCLLDNSSVLSPVDSLESPHGYLSDVASPPLMTSPFQQSPSMPHSVPPRLSHLPVS
SPSTVMSNTPMNFSVGGAAGLNGQCDWLTRLQNGMVQNQYNPMRGNMQPGAHQQTQNLQH
GMMTSLHNGLPQPHLMQSQQLQQMQQQQLQQQNMQPQQQPQQPQQQPPQQPPQQHHNPSS
NASGHIGQNFLGTELSQPDMQPASSSTMAVHTILPQDSQMLPTSLPSSLAQPMTTTQFLT
PPSQHSYSSPLDNTPSHQLQVPDHPFLTPSPESPDQWSSSSPHSNVSDWSEGISSPPTSM
QSQMGHIPEAFK
NT seq
4901 nt
NT seq
+upstream
nt +downstream
nt
gtcagatgtgcgagattgacatcaacgagtgcgtgaagagcccctgccgcaacggggcca
tatgccagaacaccaacgggagctaccactgcgcctgcaggaccggcttcaccggccgca
actgcgacactgacattgacgactnnnctccagatccatgccacaatggtggctcctgct
ccgatggcatcggcacgttcttctgcgagtgcctggctggcttccgtgggcccaagtgcg
aggaggatatcaatgagtgtgccagcaacccctgcaagaacggcgccaactgcaccgact
gcgtcaacagttacacctgcacctgcccctctggcttcagtggcatccactgcgagaaca
acacgcctgactgcacagagagctcctgcttcaacagtgggacctgcgtggatggcatca
ataccttcacctgcatctgtccacccggcttcacaggcagctacnnnnnnnnngacatta
atgagtgcgactccaagccgtgcctgaacgggggcatgtgccaggacagctacggggcgt
acaagtgcacttgtccccagggatacaccgggctcaactgccagaacctggtgcgttggt
gcgactcctctccctgcaaaaatggaggcaagtgctggcagaccaacaacctgtaccgct
gcgagtgcaacagcggatggacagggctctactgcgatgtcnnnnnnnnnnnnnnnnnng
cagcaaggtaagtccctgccatgtgtacagcctcacagggccagggtatcgatgtcgcac
atctctgcaggaattcggggctctgtgtagacactggcaacactcacttctgccgctgcc
aggccggcntcgaggagcaggtggacgagtgctcccccaacccctgccagaacggagcca
cctgcacagactacctgggaggctactcctgtgagtgtgtggctggttatcatggagtta
actgctcagaggagatcaatgagtgcttgtcccacccatgccagaatggaggaacctgca
tcgatctcatcaatacctacaaatgctcctgccccagaggaactcaaggggtacactgtg
agatcaatgtggatgactgcagccctttctttgatcctgtcaccctgggccccaagtgct
ttaacaatggcaagtgcacggatcgggtaggtggctacagctgcatctgcccccctggct
ttgtaggggagcgctgcgagggagacgtcaacgagtgcctgtccaacccctgcgatgccc
gcggcacccagaactgcgtgcagcgggtcaatgactacaaatgcgagtgccgacctggct
atgcaggccgtcgctgtgacactgtggtggacggctgtaaaggcaaaccctgcaganncg
gtggaacgtgcgcggttgccagcaacactggccgtggcttcatctgcaaatgccccccgg
gattcgtgggtgccacctgcgagaacgactcccgcacctgtgggaacctgcactgcctga
atggtggcacctgcatctccatccacaagagctccaagtgcatgtgtacgccggccttca
cgggtcccgagtgccagtacccggccagcagcccctgcacatccaacccctgctacaacg
ggggcacctgcgagttcttcagcgatgcctccccctactaccagtgccactgccctgcca
acttcaacggcctcaactgccacatcctcgacttcgatttccaaggtgggattgggcagg
atatcatcccacccaaaattgaggagaagtgtgagattgcagtttgtgcggggtatgccg
gcaacaagatctgcgatgggaaatgcaacaaccatgcctgcggctgggatgggggcgact
gctccctcaatttcaatgacccctggaagaactgctcccagtcgctgcagtgctggaagt
acttcaacgatggcaagtgcgactctcagtgcaataacgcgggctgcctgtacgatggat
ttgactgccagaaatatgaagggcagtgcaaccctctctatgatcagtactgcaaagatc
acttctcagatggtcactgtgaccagggctgtaataattttgagtgcgaatgggatggtc
tggactgtgcaaacaacatgccagagaagcttgcggatggcacgctggtggtggtggtcc
tcatcactcctgacaacctgaagaacaactctttcaacttcctgcgggagctgagccgtg
tgctgcacaccaacgtggtcttcaagaaggaccccaagggagagtatatgatctttccat
actacggcaatgaggaggagctgaaaaagcattacatcaagaggtcaacagaggactggt
cagatatgtctagtgctgtcatcaacaaagtgaagagcagcctctactccaggactggca
gaaggcagaagagagagctcgatcagatggacatcagaggatccatcgtctacttggaaa
ttgataaccgccagtgcatccagtcatcttcccagtgcttccagagtgcaaccgatgtgg
cggcattcccggggggcctnnnnnnnnnnnnnnnnnnnnncaaaatagaagccgttaaaa
gtgaaacagctgagcccacgaagaactcgcagctgtatcctatgtacgtggtggtgcctt
tggtcttgcttgctttcatcggagtgggagtactgctgtctcgtaagcggcgcagggagc
atgggcagctttggttcccagaaggcttcaaagtgacagagtcgagcaagaagaagcgac
gagaaccacttggggaggattctgttggactgaaaccactcaaaaatgcttccgatggca
cactgatggatgacaaccaaaacgagtggggtgatgaggagaccttggacaccaagaagt
tcaggttcgaggagcaggcgatgctgcctgacacggacgaccagacggaccacaggcagt
ggacccagcagcacctggatgccgctgacctgcgcatatcctccatggcacctactccac
cgcagggggaaatcgatgcagactgtatggatgtcaacgtcagaggtcctgatggcttca
cccccctcatgatcgcctcatgcagtggaggagggctggagaccggcaatagcgaagagg
aagacgatgctcccgctgtcatttcggatttcatctaccaaggcgccagcttacacaacc
agactgaccgcaccggcgagacggcgcttcacctggctgcccggtactcccgctcggacg
ctgccaagcgcctgctggaagctagtgccgatgcaaacatccaagataacatgggcagga
cgcccctccacgccgccgtctctgccgatgcccagggagtcttccagatcctgattagga
acagggcaaccgatctcgacgctcgaatgcacgacgggaccactcctctgatcttggccg
ctcgcttggctgtggagggcatgctggacgatctcatcaactgccatgcagatgtcaacg
ccgtggatgatctaggcaagtcggcactgcactgggcagctgctgtgaataacgttgaag
ccgcagtcgtcctcctgaagaacggtgccaataaggacatgcagaacaataaggaggaga
ccccactcttcctcgcagccagagaagggagctatgaaaccgccaaggtcttgctggacc
attttgcaaaccgcgacatcacggaccacatggaccgtctcccgcgggacatcgcccagg
agcggatgcaccatgacatcgtgaggctgctggacgagtacaatctggtgcggagcccac
cactgcacaacggcccgttgggggaaaaaaacgcgctgcccccaccgctctgcgctccca
gcggctacatcggcaacctgaaacctgctgtccagggcaagaaggccaggaagccgagta
ccaagggcctgagctgcaacggcaaggatgccaaagatctcaaagctaggaggaaaaaat
cacaagatggaaaaggatgtctgcttgacaattccagtgtgttgtctccggtggattccc
tggagtcaccccatgggtacctgtcagatgttgcctctcctccgctgatgacctctccat
ttcagcagtccccttccatgcctcattcggtgccgccacgtctctctcacctccccgtct
ccagccccagcacagtgatgagcaacaccccgatgaatttctccgtgggcggagcggccg
gtctgaacgggcagtgtgactggctcaccaggctgcagaacggcatggtccagaatcagt
acaacccgatgagaggcaacatgcaaccaggggcgcatcagcagacgcagaaccttcaac
acggcatgatgacctccctgcacaacgggctcccccagcctcatctgatgcagagccagc
agctacagcagatgcagcagcaacagctccagcagcagaacatgcagccgcagcagcagc
cgcagcaaccccagcagcagccgccgcagcagccgccgcagcagcatcacaaccccagct
ccaatgcgagcggccacatcggccaaaatttccttggtaccgagctgagccagcccgaca
tgcagccggcaagcagcagtaccatggcagtccacacgatcctgcctcaagattcccaga
tgctgcccacgtctctgccatcctccctcgcccagcccatgaccaccacgcagtttctaa
ctccaccttcccagcacagttattcctcccccttggacaacacccccagccaccagctcc
aggtgcccgaccaccctttcctaacgccgtctccggagtcaccggaccagtggtccagct
cgtctcctcactccaacgtgtccgactggtccgagggcatttccagccctcccacgagta
tgcagtcacagatgggacacatccccgaagccttcaagtaa
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integrated database retrieval system
