Phalacrocorax carbo (great cormorant): 104042719
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Entry
104042719 CDS
T08596
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104042719 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcao03041
]
104042719 (DDX42)
Enzymes [BR:
pcao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104042719 (DDX42)
Spliceosome [BR:
pcao03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104042719 (DDX42)
Complex B
104042719 (DDX42)
Complex C
U2 SnRNP specific factors
104042719 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
104042719
NCBI-ProteinID:
XP_009500504
LinkDB
All DBs
Position
Unknown
AA seq
645 aa
AA seq
DB search
GVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQI
HSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVT
YLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQG
DIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQED
HNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTH
THRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSR
FKGGKGKKLNIGGGGLGYRERPGLGSENSDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKA
AFQSQYKSHFVAASLNNQKTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPDSPIAATAA
AKGVPGFTSTGNLSSVPTFPSVGVQGFNNTNASANNREGIGGGGXXXXXXXDNRNSRHNE
VPRRGEGGGRYNDVQRHGEGGGRHSDAYRHGEGRHGDNHRHSESRHFADVGSGNRNNGDS
RNSNEGRNNENRNGENRKDANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
ggtgttccagttgcactaagtggcagagatatgattgggatagctaagactggaagtggg
aagacagcagccttcatctggccgatgttgattcacatcatggatcagaaggagcttgaa
ccaggggacggtcccattgcagtgatcgtatgcccgaccagagagctttgccaacagatc
cattctgaatgtaagcgctttggtaaggcatataatctgcgctctgtagctgtgtacgga
ggaggaagcatgtgggagcaagccaaagccctccaggagggggcagagatcgttgtctgc
acaccaggtcgtttaattgatcatgtgaaaaagaaagctacaaaccttcaaagagtcact
taccttgtgtttgatgaagctgacagaatgtttgatatgggttttgaatatcaggtcaga
tcaattgcaagccatgtacgtcctgacagacagaccctcttgttcagtgccactttccgc
aagaagattgagaaattggctcgagatattctgatcgacccaattcgagttgtgcaggga
gacattggagaggcgaatgaagatgttactcaaattgtggagattttcccctctggccct
agcaaatggaactggctgactcgacgcctcgtggagttcacatcttctgggagcgttctc
ctgtttgtcaccaagaaggcaaacgcagaagagctggccaataaccttaagcaggaggat
cataatctggggctgcttcatggtgacatggaccagagtgagaggaataaagtcatttca
gaatttaagaaaaaaggcatcccgatactggtagctaccgatgtggcagctcgtgggtta
gatattccttccattaagactgtgatcaattatgacgtggctcgggacatagatacgcac
acccatagaattggccgtactggcagagcaggcgagaagggagttgcctacaccctgctg
actcccaaagacagtaactttgccggtgatcttgtcagaaatctggaaggcgctaatcaa
catgtttccaaagagctgttggatctagcaatgcagaatccatggttccggaaatcacgt
ttcaaaggaggaaaaggcaagaagctgaatattggtggaggtggcttagggtaccgtgaa
cgtcctggtctgggatcagaaaattctgaccgtggaaacaacaacagcgtgatgagtaac
tatgaggcatacaagccatccacaggggcaatgggagacaggcttacggcaatgaaagca
gcttttcagtcccagtataagagccactttgttgctgcaagcttgaataatcaaaagact
ggtagctccgctgctggtgccagtggctggaccagcgctgggagcttgaactcagtaccg
acaagttcagcacagcaaaatgctgcaaatcctgacagcccgatcgcagccaccgcagca
gcgaagggtgttccaggtttcaccagcacggggaatttgagtagcgttcccacctttcca
agtgtcggagtacagggcttcaacaacacaaatgccagcgccaacaatcgagaaggcatt
ggcggcggcggnnnnnnnnnnnnnnnnnnnnncgacaaccggaacagtcgccacaatgag
gtcccgcgccgcggagagggcggtggtcgctacaacgatgtgcagcgccatggggaagga
ggcggtcgccacagtgacgcttaccgccacggagagggccgacacggtgacaaccatcgc
cacagtgaaagccggcacttcgctgatgtgggcagtggcaatcgcaataatggtgatagc
aggaatagcaacgaaggtaggaacaacgagaacaggaatggtgagaacaggaaggatgcc
aacagccgagacaacaagacagatggttttgctgtcccagagcccccaaaacgtaagaag
agccggtgggacagctaa
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integrated database retrieval system
