Phalacrocorax carbo (great cormorant): 104043121
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Entry
104043121 CDS
T08596
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
pcao
Phalacrocorax carbo (great cormorant)
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pcao04131
]
104043121 (VPS13A)
Membrane trafficking [BR:
pcao04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
104043121 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
104043121
NCBI-ProteinID:
XP_009500983
LinkDB
All DBs
Position
Unknown
AA seq
2142 aa
AA seq
DB search
SKKSKYEDVIDLNICADLSCLRVFIREKKHRIAEIHIEGLDSQVIMKKAATEMTAKLKNI
IIVDSDEMALYKKALYITGKEVFNFRMVSYVNATDGIAYTNMDVVDNRIYLTVGCIQVVF
VNKFVSSILAFINNFQAAKEALTEATVQAAEKAATGVKELAERSSRLALDINIKAPVVIV
PQSAMSANVLVADLGLITVKNQFFIAKTKTRYNLPPVVDSMTVKLSELKLYRSCYEQGAL
QTEVQLLQPLNLEVAVERNLAAAWYNEVPDIEISGRLKPMNLILSQEDITTILRTLNENI
GGNSGASSLPEPKDTTSHCSDMHSTSQQSAGVTVVTSAVVELHSPMKIKTTLKLDFRFDS
LTLVLYSPNSKQATNLDQRDDLSKLAEFKLVLMSAALKMLSDGSMNASVKLANCTLDDKR
QSIQKATPRMVEMKHGFEKKVMVDISYKQGRDGTVLDVIVQEIYLCASMEFLLTVADIFL
KANAESAAAQRNLKQSLPLKEQAPVQPVSTMEMNIVVKNPEIVFVADLTRSDAPALVVTT
QCEVFIKHSPERYSMTAAVKEIQMKACPFLPEKRKGNVTTILQPCDFFFEMKQSGTNPQT
ADLTIKSLTIKVSPIIINTVITITSALYQTAETTEEEISQIPPDLWNKKDIKNLKMWFLE
EPNENENTNPTTELVPTGESLKISIESVFLTLEAGVGHRTVPMLLAKSSFLGEVKNWSTL
INLRSRLELEVHYFNEMFGVWEPLLEPLEIEKTDLFKPWILDIKMKKKTKKALVESDAEE
ENYKVPEYKTVINVSSKDQLNITLSRCGLQMLSNLGTAFAEAASQTSDIFKKDRAPFVII
NSLGLPITVLPSDSFSVLNVEFGAKIFHLRDGENLNMEFVRTKSETDQFTAMTTLSSKRF
YIQICPDNHSTVEKIPLTKVGRCIYRLRHEESGVERAVVCQIDTVEGSKLITIRSPMQIR
NHFSIPLNIFEEGRCLGTASPENEFNIPLSSYRSILSLQPLASENGVDGEYDMCEGITFD
EIMKNVDSLLQRKCQPVRSTNHSLIINIVPVKDTLTSSLCAEDQWDFPYVVHLWPSVLLR
NLLPYEITYSVEGDGNKYNTLQEGCSAQIHNAVLDQTKLDLQLLNYLDQNWKSEYQVKSN
LPDISFTTFYCITELDKTELDIAVHVTYTTGQMVVAIHSPYWMVNKTGRMLQYKADGIHR
KHPPDYKKPLLFSFQPKNFLQNNKVQLMVTDSELSDQFSLDTVGSHGSVKCKSHKKEYQV
GVTINNSSFNITRIVTFTPFFMISNRSKYTLEVAEEGKEKWIPIVLQQCIPFWPENDANK
LLVRVENSNLPPKKINFDKQENCLLLHLDNKLGGITVDVNMTEHSTVITFSNYHDGAAPF
LLINHTKEEIIEYGQSSLSELEDCLQPNMAVLYTWADPAGSRKLKWKCGNRTEEITPKED
KMEILSLDGRKAVYLVSFFEGLQRIVLITEDENVFKLAYESVKAELAEQEIVLSLQDVGI
SLVNNYTKQEVSYIGITSSDVVWETKPKKKSRWRPLSVKQTDKLEQEFKDYSELTPSENK
IIELESNVLVCLTPNGMNMKIQQPNEIPIRRNYLPALKVEYSSSAHQKSFRIQIYRIQIQ
NQIPGAIFPFVFYPIKPPKSITLDSAPKPFTDVSIVMRTAGHSQISHIKYFKVLIQEMDL
RLDLGFLYALVEFFTRTDVLSDQELELFKKDVESLQEELMSVSSMDTSQISLYEYFHISP
IKLHLSFSLSTGGEDSNKEERKNELIPLQSLNMLYFCFAVDNKDILFYFFRLAFFELSYH
FCTTQQLQSAVVRHYSKQAIKQMYVLILGLDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQ
GPEEFIEGMALGLKALVGGAVGGLAGAASRITGAMAKGVAAITMDEDYQQKRREAMNKQP
TGLREGITRGGKGLVSGFVSGITGIVTKPIRGAQKEGAAGFFKGVGKGLVGAVARPTGGI
IDMASSTFQGIKKVTDSSEDVISLRPPRFFGEDGVIRPYRLRDGTGSQMLQKIENGRFAK
LRYIAHAMVNSTDLLMVTKSGVLFVTKGTFGQLTCEWQYTYDEFTKEPFIVDGRRLRIEA
KERVKSVFHAKEFGKIINFKSPEDAKWILSKLEEVRENQPKL
NT seq
6431 nt
NT seq
+upstream
nt +downstream
nt
catcaaaaaaatcgaagtatgaagatgttatcgacctcaatatctgtgcagatttatcct
gtttacgtgtctttattagagagaagaaacatagaatagctgaaattcacattgaaggtc
tggatagtcaagtgatcatgaagaaggcagcaacagaaatgactgcaaaattgaagaaca
tcattattgtggattctgacgagatggcattgtataaaaaggctctttacatcacaggaa
aagaagtcttcaacttcagaatggtatcatatgtgaatgctacggatggcattgcatata
caaatatggatgttgttgacaatcgtatttacctaactgttgggtgtattcaagtagttt
ttgtcaacaagtttgtttcatctattttggcttttataaataacttccaagctgccaagg
aagctcttactgaagcaactgtacaagcagcagagaaagcagctacaggtgtcaaagagc
tagcagagcgtagttcccgtttggcactagatatcaatattaaagcacctgttgtgatag
ttccacagtcagcaatgtctgcaaatgtcctggtggctgatctcggtctaatcactgtga
agaaccaattctttatcgctaaaaccaaaacacgatataatctcccgcctgttgttgact
ctatgacagtgaaattgagtgaactaaagttatacagatcatgctatgagcagggtgcat
tgcaaactgaagtacagttgctgcagccactcaatctggaagtagctgttgaacgaaatt
tagctgctgcatggtataatgaagttcctgatattgaaatatctggccgactcaagccta
tgaatcttattctcagtcaggaagatattaccacaatattgaggacactaaatgaaaata
taggtggaaactctggtgcatcatctttaccagaaccgaaagatacaactagccattgta
gtgatatgcatagtacttcacagcagtctgcaggtgtaactgttgtgacgtcagctgtgg
tggaattgcattcacctatgaaaataaaaacaacattaaaactggacttcagattcgact
ctctgactttagtattgtatagtccaaattcaaaacaggctacaaatttggatcagagag
atgacctttcgaagcttgcagaatttaagttagttttgatgtcagctgctctcaaaatgt
tatcagacggttcaatgaatgcttcagtcaagctggcaaactgtacgttagatgataaaa
gacagtcaatacagaaggctacaccaaggatggtggaaatgaagcatggatttgaaaaga
aagttatggtggatataagctataagcaggggagagatggcactgttcttgatgtgattg
ttcaagagatatacctttgtgcaagcatggagtttctacttactgttgcggatatattcc
taaaggctaatgcagaaagtgctgctgcacagagaaatctcaaacagtcattacctttaa
aggagcaagcacctgtgcagcctgtatctacaatggaaatgaacattgttgttaaaaatc
ctgagatcgtgtttgtggctgatttaacaagaagcgatgctcctgcattggtagttacaa
cacagtgtgaggtcttcattaaacatagccctgaaaggtatagcatgacagctgctgtta
aagagatacaaatgaaagcatgcccatttcttccagaaaaaaggaaagggaacgttacta
cgatattacagccttgtgacttcttctttgaaatgaaacagtcaggtactaatccacaga
cagctgatctaacgattaaatctctaacaataaaagtttcaccaataatcataaacacag
taattactattacatcagccctttatcaaactgcagaaacaacagaagaagagattagtc
aaattcctccagacttgtggaataagaaggatataaaaaatctaaaaatgtggtttctgg
aagagccaaatgaaaacgaaaatacaaatccaaccactgagctggtacccacaggagagt
cattgaaaatcagtatagaatctgtttttctaacacttgaagctggggtcgggcatcgaa
ctgtaccaatgcttttagctaagtcctcatttcttggagaagtcaaaaactggagtactc
tcatcaacctacgttctcgtcttgagctagaggtacactattttaatgagatgtttgggg
tgtgggaaccgttgcttgaaccactagaaattgagaagacggatttattcaaaccatgga
tccttgatatcaagatgaagaagaagactaaaaaagcattggttgagtcagatgcagaag
aagaaaactacaaagttccagaatataaaacagtaataaatgtttcctcaaaagaccagc
tgaacattacactctccagatgtgggctacaaatgttgagtaacttgggcacggcgtttg
ctgaagcagctagtcaaacttcagacatcttcaaaaaagaccgagcaccatttgtaataa
taaattctttaggacttcccatcactgtcttgcctagtgattcctttagtgtccttaatg
ttgaatttggagcaaaaatatttcatttaagagatggagagaatttaaatatggaattcg
tcagaactaaaagtgagactgaccagttcacagcaatgacaactctgagtagcaagaggt
tttacattcagatctgtccagataatcattccactgtggaaaagattccattgacaaaag
taggtcgatgtatttacagattgagacatgaggaatcaggtgttgaaagggctgttgtct
gccaaattgatactgttgaaggaagcaagttgataactatacgttctcctatgcagataa
ggaatcacttttcaatcccattaaatatttttgaggaaggaagatgtttagggactgctt
caccagaaaatgaattcaacataccattgtcctcttacagatccatactgagtttgcaac
cactagccagtgaaaatggagtagatggagaatatgatatgtgtgaaggaattacatttg
atgaaattatgaaaaatgttgacagtttattacaaaggaagtgccagcctgtgaggtcaa
ctaaccactcacttatcatcaacattgttcctgtaaaagacacactgacatcttcattat
gtgcagaagatcaatgggattttccatatgttgttcatttatggccttctgttcttctcc
gcaatcttcttccttatgaaataacttattctgtagagggagatgggaacaaatataaca
ctctgcaagaaggatgttctgcccagattcataatgcagtcttggatcaaacaaaactag
atttacagttgcttaactatctggatcaaaattggaaaagtgagtaccaagtaaaaagca
atctaccggatatcagcttcacaacattttactgcatcactgagttggataagactgaac
tggatattgctgtccacgtgacctacacaactgggcagatggttgtagcaattcacagtc
cgtactggatggtaaataaaactggtcgaatgttacaatacaaagctgatggtattcacc
gcaagcatcctccggattacaaaaagccgctccttttttctttccagcccaaaaacttcc
tccaaaataacaaggtgcagcttatggtaacggacagtgaactgtctgatcagttttcac
tggacactgttggaagtcatggttctgtgaaatgcaagagtcataaaaaggaatatcaag
ttggtgtcaccataaacaacagcagttttaatattactagaattgtaactttcaccccat
tttttatgatctcaaatagaagcaaatacactttggaagtagctgaagaaggcaaggaga
agtggattcctattgtcttgcaacagtgcattcctttttggcctgaaaatgatgccaaca
aactgcttgtgagagtcgaaaattctaacctccccccaaagaagataaattttgataagc
aagaaaactgtctgctactgcatttggacaacaagcttggaggaattacagtggatgtta
acatgactgaacattccacagtgattaccttttctaattaccatgatggtgcagctccat
ttctgttgataaaccatactaaagaggaaattattgagtatggacaaagctccctcagtg
aactggaagactgtcttcagccaaatatggcagtactgtatacttgggcagacccagcag
gatctagaaaattgaaatggaaatgtggaaatagaactgaggagatcaccccgaaagagg
acaaaatggaaatactcagcctggatggtagaaaagcagtctatttagtgtcattttttg
aaggtttgcagcgtattgtcctgatcactgaagatgagaacgtttttaaattggcgtatg
aaagtgtaaaagcagaactagcagagcaagaaattgttctgtctttgcaagatgttggaa
tttcattggttaataattatacaaagcaagaggtgtcctacattggaattacaagttctg
atgtggtttgggagacaaaacccaagaagaagtcaagatggagaccactgagcgttaagc
agactgataaattagaacaagagttcaaagattacagtgagctaactccttcagaaaata
agattattgagttggaatcaaatgttttggtatgtttaactcctaatgggatgaacatga
aaattcaacaaccaaatgagatccctattagaaggaattatctgccagctttaaaagtag
aatacagttcatctgctcatcagaagtctttcagaattcaaatttacaggatacagatac
aaaaccagattcctggagccatatttccctttgtgttctatcctattaaacctccaaagt
ccatcaccttggattcagcaccaaaaccatttactgatgtcagtattgtcatgagaactg
caggacattcacaaatatctcatattaagtattttaaggtcctgattcaagagatggatc
tcagattagatcttggcttcctgtatgcgctggttgaattcttcacacggactgatgtgc
tgagtgaccaagagctagaacttttcaaaaaggatgttgaatctcttcaagaagaactga
tgagtgtgtcatcaatggatacatcacaaatcagcttgtatgaatactttcatatctctc
caattaagttacacctaagcttttcactcagtacgggtggagaagatagcaacaaagaag
aaagaaagaacgaattgataccacttcagtccttgaatatgttatatttttgttttgctg
tggataataaggacatacttttttatttttttaggctggcattctttgaactcagctatc
acttctgtactacccaacagctccaatcagcagttgtaaggcattattcaaaacaggcta
ttaaacagatgtatgttcttattcttggccttgatgtcttgggtaatccatttggattca
taagaggcttgtctgaaggcgtagaagcatttttctatgaaccttaccagggagccatcc
agggccctgaagaatttatagaaggaatggcactaggacttaaagcattagtagggggag
ctgttggtggattagctggtgctgcatcaagaatcactggcgctatggcaaaaggagtag
ctgcaataactatggatgaggattaccagcagaaaaggagagaagccatgaataaacagc
ccactggtctgagagagggtatcactcgtggtggaaaaggattagtttctggttttgtca
gtggcataacaggaatagttacaaaaccaataagaggagctcagaaagaaggagcagctg
gttttttcaaaggtgttggaaaaggcttagtgggagcagtagctaggcctactggaggaa
tcatagacatggcaagcagcacatttcagggtattaaaaaagttacagattcgtcagaag
atgtgataagcctgcgcccacctcgtttctttggtgaagatggagttattagaccttaca
gattaagagatggaactggaagtcaaatgttacagaaaatcgaaaatggaagatttgcaa
aactcagatatattgcacatgcgatggtcaacagtacagacctgctaatggtaacaaaaa
gtggtgtgctgtttgtgacaaaagggacatttggacagctgacatgtgaatggcaatata
cttacgacgaatttaccaaagaaccattcattgttgacggcagaaggttacgcattgaag
ccaaggaacgagttaagtctgtgttccatgccaaagaatttggaaaaattattaatttta
aaagtccagaggatgctaagtggatcctttctaaactggaagaagtgagagagaaccagc
caaagctgtaa
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