KEGG   Phalacrocorax carbo (great cormorant): 104043354
Entry
104043354         CDS       T08596                                 
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein
  KO
K14416  elongation factor 1 alpha-like protein
Organism
pcao  Phalacrocorax carbo (great cormorant)
Pathway
pcao03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pcao00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    104043354 (HBS1L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcao03019]
    104043354 (HBS1L)
Messenger RNA biogenesis [BR:pcao03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     104043354 (HBS1L)
SSDB
Motif
Pfam: GTP_EFTU GTP-eEF1A_C GTP_EFTU_D3 GTP_EFTU_D2 MMR_HSR1 AAA_22 DO-GTPase2 AAA_29
Other DBs
NCBI-GeneID: 104043354
NCBI-ProteinID: XP_009501255
LinkDB
Position
Unknown
AA seq 503 aa
VIAEENGHANTPQKGLLTEDASVASRVLEAVSKSTLSPQVVQVSEEQNTVPAPVKKSSKT
KPQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQESKK
AGKASFAYAWVLDETGEERERGVTMDVGMTKFETKTKVITLMDAPGHKDFIPNMITGAAQ
ADVAILVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEI
TSKLGQFLKQAGFKESDVAFIPTSGLGGENLVTRGQLSDLTQWYKGKCLLEQIDSFKPPQ
RSVDKPFRMCVADVFKDQGSGFCVTGKIEAGYIQVGERLLAMPPNETCTAKGITLHDEPV
DWAAAGDHVSLTLTGMDIIKINVGCVFCDPKEPIKVCTRFRARVLIFNIEVPVTKGFPVL
LHYQTVSEPATIRRLLSVLHKSTGEVTKKKPKFLTKGQNALIELQTQRPVALELYKDFKE
LGRFMLRYGGSTIAAGVVTEIKE
NT seq 1513 nt   +upstreamnt  +downstreamnt
tgtgattgctgaagaaaatggccatgctaacacacctcagaaaggactgttaactgaaga
tgccagtgtagcttctcgggtacttgaggccgtctcaaaatctactctttcaccccaggt
agtgcaggtttcagaagagcaaaatacagtgcctgctccagtaaaaaagtcaagcaagac
aaaaccacaaatagatgtgaaagcggagctggagaagaggcaaggaggaaagcaactgct
taatttggtggtaataggacatgttgatgcaggtaaaagtactctaatgggtcatctgct
ctaccttttgggaaacgtgaacaaaagaactatgcacaaatacgaacaggaatctaagaa
ggctggcaaagcttcgtttgcctatgcatgggttttggatgaaactggtgaagagagaga
aaggggagtgacaatggatgtgggcatgaccaaattcgagacaaagactaaggtaattac
actgatggatgctccaggccacaaagacttcattccaaatatgatcacaggagctgcaca
ggctgatgtggctattttggttgtggacgctagcagaggagagtttgaagcaggttttga
gacaggtggacaaactcgagaacatggattattagtgcgctctcttggagtgacacagct
agctgttgcagtcaataaaatggaccaggtcaattggcaacaggaaagatttcaggaaat
tacaagtaaactcggccaatttcttaaacaagctggctttaaggaatcggatgtggcttt
tatcccaacaagtggtcttggtggtgaaaatctggtcacaaggggtcagttaagtgacct
cacacagtggtataaaggaaagtgtttgttagagcaaattgattctttcaagccaccaca
gagatcagtggataaaccatttaggatgtgtgttgctgatgtttttaaagaccaaggatc
gggattttgtgtgactggtaaaatagaagcaggctatattcaggttggagaacgacttct
ggcaatgcctcccaatgaaacttgcactgcaaaaggaatcacactgcacgatgaaccagt
tgattgggctgcagcaggagatcacgttagtctcactttgaccggcatggatatcatcaa
aatcaatgttggctgtgtattttgtgatcccaaggaacccatcaaagtttgcactcgttt
cagagctcgggttctcattttcaatattgaggttccagtcactaaaggatttcctgtgct
tttacactatcaaaccgtaagtgaacctgctactattagaagactgttgagtgtcctgca
caaaagtacgggtgaagtgacaaagaaaaaacctaagttcttgactaaaggacagaatgc
tctaatagaactacaaactcaaagacctgttgctctagagttgtataaagattttaaaga
gcttgggaggtttatgttacgctacggtggttccactattgctgcaggagttgtcacaga
gattaaagaatga

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