Phalacrocorax carbo (great cormorant): 104043354
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Entry
104043354 CDS
T08596
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104043354 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104043354 (HBS1L)
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
104043354 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
AAA_29
Motif
Other DBs
NCBI-GeneID:
104043354
NCBI-ProteinID:
XP_009501255
LinkDB
All DBs
Position
Unknown
AA seq
503 aa
AA seq
DB search
VIAEENGHANTPQKGLLTEDASVASRVLEAVSKSTLSPQVVQVSEEQNTVPAPVKKSSKT
KPQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQESKK
AGKASFAYAWVLDETGEERERGVTMDVGMTKFETKTKVITLMDAPGHKDFIPNMITGAAQ
ADVAILVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEI
TSKLGQFLKQAGFKESDVAFIPTSGLGGENLVTRGQLSDLTQWYKGKCLLEQIDSFKPPQ
RSVDKPFRMCVADVFKDQGSGFCVTGKIEAGYIQVGERLLAMPPNETCTAKGITLHDEPV
DWAAAGDHVSLTLTGMDIIKINVGCVFCDPKEPIKVCTRFRARVLIFNIEVPVTKGFPVL
LHYQTVSEPATIRRLLSVLHKSTGEVTKKKPKFLTKGQNALIELQTQRPVALELYKDFKE
LGRFMLRYGGSTIAAGVVTEIKE
NT seq
1513 nt
NT seq
+upstream
nt +downstream
nt
tgtgattgctgaagaaaatggccatgctaacacacctcagaaaggactgttaactgaaga
tgccagtgtagcttctcgggtacttgaggccgtctcaaaatctactctttcaccccaggt
agtgcaggtttcagaagagcaaaatacagtgcctgctccagtaaaaaagtcaagcaagac
aaaaccacaaatagatgtgaaagcggagctggagaagaggcaaggaggaaagcaactgct
taatttggtggtaataggacatgttgatgcaggtaaaagtactctaatgggtcatctgct
ctaccttttgggaaacgtgaacaaaagaactatgcacaaatacgaacaggaatctaagaa
ggctggcaaagcttcgtttgcctatgcatgggttttggatgaaactggtgaagagagaga
aaggggagtgacaatggatgtgggcatgaccaaattcgagacaaagactaaggtaattac
actgatggatgctccaggccacaaagacttcattccaaatatgatcacaggagctgcaca
ggctgatgtggctattttggttgtggacgctagcagaggagagtttgaagcaggttttga
gacaggtggacaaactcgagaacatggattattagtgcgctctcttggagtgacacagct
agctgttgcagtcaataaaatggaccaggtcaattggcaacaggaaagatttcaggaaat
tacaagtaaactcggccaatttcttaaacaagctggctttaaggaatcggatgtggcttt
tatcccaacaagtggtcttggtggtgaaaatctggtcacaaggggtcagttaagtgacct
cacacagtggtataaaggaaagtgtttgttagagcaaattgattctttcaagccaccaca
gagatcagtggataaaccatttaggatgtgtgttgctgatgtttttaaagaccaaggatc
gggattttgtgtgactggtaaaatagaagcaggctatattcaggttggagaacgacttct
ggcaatgcctcccaatgaaacttgcactgcaaaaggaatcacactgcacgatgaaccagt
tgattgggctgcagcaggagatcacgttagtctcactttgaccggcatggatatcatcaa
aatcaatgttggctgtgtattttgtgatcccaaggaacccatcaaagtttgcactcgttt
cagagctcgggttctcattttcaatattgaggttccagtcactaaaggatttcctgtgct
tttacactatcaaaccgtaagtgaacctgctactattagaagactgttgagtgtcctgca
caaaagtacgggtgaagtgacaaagaaaaaacctaagttcttgactaaaggacagaatgc
tctaatagaactacaaactcaaagacctgttgctctagagttgtataaagattttaaaga
gcttgggaggtttatgttacgctacggtggttccactattgctgcaggagttgtcacaga
gattaaagaatga
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