Phalacrocorax carbo (great cormorant): 104043645
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Entry
104043645 CDS
T08596
Symbol
VCP
Name
(RefSeq) LOW QUALITY PROTEIN: transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao04137
Mitophagy - animal
pcao04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104043645 (VCP)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
104043645 (VCP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104043645 (VCP)
03009 Ribosome biogenesis [BR:
pcao03009
]
104043645 (VCP)
04131 Membrane trafficking [BR:
pcao04131
]
104043645 (VCP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcao04147
]
104043645 (VCP)
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
104043645 (VCP)
Ribosome biogenesis [BR:
pcao03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
104043645 (VCP)
Membrane trafficking [BR:
pcao04131
]
SNARE
SNARE associated proteins
Others
104043645 (VCP)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
104043645 (VCP)
Exosome [BR:
pcao04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
104043645 (VCP)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
nSTAND3
Parvo_NS1
AAA_28
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
Vps4_C
AAA_24
NB-ARC
TsaE
ResIII
Viral_helicase1
NACHT
Sigma54_activat
SLFN-g3_helicase
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
104043645
NCBI-ProteinID:
XP_009501604
LinkDB
All DBs
Position
Unknown
AA seq
805 aa
AA seq
DB search
SKADDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQAKMDELQLFRGDTVLLKGKKRRE
AVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGI
TGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEG
EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGP
PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEL
DAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE
VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK
MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVK
RELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE
LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILT
EMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV
AKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDD
PVPEIRRDHFEEAMRFARRSVSDNDIRKWRXAVRRLLNSISCLPLCAAARRFPSGNQGGA
GPSQGTGGGSGGNVYSEDNDDDLYG
NT seq
2419 nt
NT seq
+upstream
nt +downstream
nt
ttctaaagcggatgacttatcaactgctattctgaagcagaagaacaggcccaatcggtt
aattgttgatgaagccatcaatgaagacaacagtgttgtgtcactgtcccaggcaaaaat
ggacgaattgcagctgttcagaggagacactgttctgctaaaaggaaagaagaggagaga
agcagtctgcattgttctgtcagatgatacctgctcggatgagaagattcgcatgaatag
ggttgttcgcaacaacctgagagtgcgcctgggtgacgtgatcagcatccagccttgccc
agatgtgaaatacggcaaacgtatccacgtgctgccaattgatgacacggtagaagggat
cacagggaatctgtttgaggtctatctcaagccgtacttcctggaagcatacagacccat
caggaaaggtgatatcttcttagtgcgtggagggatgcgtgcagtggagtttaaagtggt
ggagacagatccaagtccgtactgcatagtggctccagacacagtgatccactgcgaagg
agagcccatcaaacgagaggatgaagaggagtcactgaatgaagtgggctatgatgacat
cggtggctgccggaagcagctggctcaaatcaaagagatggtggaacttcccctccgaca
ccctgcgctcttcaaggctataggggtgaagcctccacgtgggatcctgctctacggtcc
tcctggaactggtaaaacactgattgcccgagcagtggccaatgaaacaggggctttctt
cttcctgatcaacggtcctgagatcatgagcaagctggctggtgagtctgagagcaacct
gaggaaagcctttgaagaagcagagaagaatgctcctgctatcatcttcattgatgaact
ggatgccattgctcctaagagagagaagacacatggagaggtggaacgtcgcattgtgtc
tcagctgttgactcttatggacggactaaagcagagagcgcacgtgatcgtcatggcagc
taccaacaggccgaacagcattgacccagcactcaggcgatttggtcgttttgacagaga
ggtagatatcggtatcccagatgccactgggcgcctggagatcctgcagatccacacgaa
gaatatgaaactggctgacgatgtggatctggaacaggtggcaaacgagacccatggcca
tgttggtgctgacttggctgctctttgctcagaagctgctcttcaggctatcagaaagaa
gatggatctcatagacctagaagatgaaaccatcgatgctgaagtgatgaactcactggc
tgtgaccatggatgacttcaggtgggctctgagtcagagcaacccttctgctcttcggga
gactgtggtggaggtgccacaagttacctgggaagatattggtggtctagaagatgtaaa
gagagaactccaggagcttgtacagtatcctgtggagcatccagacaagttcctcaaatt
tggtatgaccccatcaaaaggggttctgttctatgggccacctggttgtggtaagacact
gctggccaaagccattgccaacgaatgccaggcaaacttcatttccatcaaggggccaga
attgctcaccatgtggtttggtgagtctgaagccaacgtgcgtgagatctttgacaaggc
ccgccaagcagccccttgtgtgctcttctttgatgagctggactccatcgcaaaggcccg
aggtgggaatatcggtgatggtggtggcgctgcagaccgtgtcatcaaccagatcctgac
agagatggatggcatgtccaccaagaagaacgtcttcatcatcggtgccaccaacaggcc
agacattattgacccagccatcttacgccctggccgcctggatcagctcatctacatccc
cctgcctgacgagaagtcccgggttgctattcttaaggccaacctgaggaaatcaccagt
tgccaaggatgtcgacctggatttcctagccaagatgactaatggcttttcgggggctga
cctgacagaaatttgccagcgtgcctgcaaactggccatccgcgagtccattgagagcga
gatcaggcgagaacgtgagaggcagaccaacccttccgccatggaggtggaggaggacga
cccggttcctgagatacgcagggatcactttgaggaggccatgcgctttgctcgccgctc
cgttagtgacaatgacatcaggaaatggcgctgagctgtgaggaggcttttgaacagcat
ctcttgtctccccctctgtgctgctgcacgcaggttcccatcgggtaaccagggtggtgc
tggtccgagccaaggcacgggaggtggcagcgggggcaacgtgtacagtgaagacaatga
cgatgatctctacggttaa
DBGET
integrated database retrieval system
