KEGG   Phalacrocorax carbo (great cormorant): 104044801
Entry
104044801         CDS       T08596                                 
Symbol
WDR33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
  KO
K15542  polyadenylation factor subunit 2
Organism
pcao  Phalacrocorax carbo (great cormorant)
Pathway
pcao03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pcao00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    104044801 (WDR33)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcao03019]
    104044801 (WDR33)
Messenger RNA biogenesis [BR:pcao03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     104044801 (WDR33)
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_EML Beta-prop_CAF1B_HIR1 WDR55 EIF3I Beta-prop_IFT140_1st Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_Vps41 Beta-prop_IFT122_1st eIF2A WD40_RFWD3 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 Collagen Beta-prop_HPS5 Beta-prop_WDR11_2nd Ge1_WD40 PEP5_VPS11_N
Other DBs
NCBI-GeneID: 104044801
NCBI-ProteinID: XP_009502976
LinkDB
Position
Unknown
AA seq 1321 aa
MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIKYLENRVWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYAPGDDLEPNSLAVIPGMGIPEQLKIAMEQEQMGKDESNDIEMTIPGLDWG
MEEVMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPLPPPPEPLNDRKEDIKLEEKKKT
QAEIEQEMAALQYTNPQLLEQLKIERLAQKQAEQVQPPPPGGSLHGPQPFPGQGPMSQMP
QGFQQPLQPQQMPMNMPQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGAGPQGFMGPQGP
PGPQGPPQGMPRPQDLHGHQGMQRHPGPHGPMGPPGPQGNAGPQGHLGPQGLPGSQTHLG
PQGPPGPQGHLGPQGPPGGQGMQGPPGPRGMQGPLPHGMQGAPGSQGMQGPISQGPLMGL
NPRGMQGPPGPRDNQGPTPQGMMMGHPQEMRGPHMQSGLLGHGPQEMRGLQGPPPQGTML
GPPQELRGPQGQQGPPQGSLVGPQGNMQGPQGQPNPSRGPHPSQGPLPFQQQKTPLLGDG
PRPPFNQDGQNPGPPPLIPGLGQQGGQGRLGPHNQGPGLNKGDSRGPPNHHMGPLSDRRH
DQNSGGPDHGPERGLFRGGQEWGDGRDSRGMPDRRGPHPDFHDDFDRPDDFRDDFHPDKR
FGHRLREFEGRGGPPLQDEKWRRGGPGPPFPPDHREFEGGGSNRGPPGAWEGRRPSDDRY
PRDPDDARFRGRRDESFRRGGPSRHEGRGPRGRDGFPGPEDFGPDDTFDSPDENSRGRDH
GVRGRGRGALRGGRKGLLPTPDEFPRFEGGRKPESWDGNREPGSRPDHPPHDGHSPANRE
RSSSLQGMDMASLPPRKRPWHDGPGTSDHREMDAPGGPPEERGKGRGNSGPSQRAPKSGR
SSSLDGDHHDGFHRDEAFGGGPAGGNNPSRGGRSGSNWGRGNNMNSGQSRRGSSRGGGRG
R
NT seq 3966 nt   +upstreamnt  +downstreamnt
atggccacagaaattggatccccaccacgatttttccatatgccgaggttccagcaccag
gcacctcggcagttgttctacaaaagacctgattttgcacagcagcaagcaatgcaacag
cttacctttgatggaaagcgtatgagaaaagctgtgaaccgaaagaccatagactacaat
ccctctgtaattaaatatttggagaatagagtatggcagagagaccagcgagatatgcga
gcaatccagcctgatgcaggatattataatgatttggtccctcctataggaatgctgaac
aaccctatgaatgctgtgacaacaaaatttgttcggacatctactaataaagtaaaatgc
ccagtgtttgttgtcaggtggactcccgaggggagacgattggtcactggtgcatctagt
ggagagttcactttatggaatggactaactttcaattttgaaacgatattgcaggctcac
gacagccctgtgagggctatgacttggtcacacaatgatatgtggatgctgacagcagac
cacgggggatatgtgaaatactggcagtccaacatgaacaacgtcaagatgttccaggca
cataaggaggcgattagagaggccagtttctcacccacggataataaatttgctacatgc
tctgacgacggcactgttagaatctgggactttctacgttgccatgaggagagaattctt
cgaggacatggagcagatgtgaaatgtgttgattggcatccaacaaagggattagttgta
tcaggaagtaaagatagccaacagcccatcaagttctgggatccaaagactggccagagc
cttgcgacactacatgctcataaaaacacagtgatggaggtgaaactgaatctgaatggc
aactggctgctaacagcttctcgtgaccacctctgtaagctctttgacattcgtaacctg
aaagaagaacttcaggtcttcaggggtcataagaaggaggccacagctgtagcctggcat
cctgttcatgaagggctgtttgccagtggaggatctgatggctctttgttgttctggcat
gttggtgttgagaaggaggttggtggaatggaaatggcccatgagggaatgatctggagt
ctggcgtggcatcctcttggacacattctctgttcgggctcaaatgatcacaccagcaag
ttttggactagaaatcgacctggagataaaatgcgagatcgttacaacttgaatctgcta
cctgggatgtcagaggatggtgtggaatatgctccaggagatgatctggaacccaacagc
ctagcagttattccagggatgggaatacccgaacaattgaaaatagccatggagcaagag
cagatggggaaagatgagtccaatgatattgaaatgacaatcccaggactggattgggga
atggaggaagtaatgcaaaaggaccaaaagaaggtgccacagaaaaaagtgccctatgca
aaacccataccagcacagtttcagcaggcatggatgcagaataaagttcctttgcctccc
ccacctgagccactgaatgacagaaaggaagatattaagctggaggagaaaaagaagaca
caggcagagattgaacaggaaatggcagcacttcagtacacaaacccacaactcttggag
caattgaagattgagagacttgcacaaaagcaagctgagcaagtgcagccaccacctcca
ggaggctctcttcacggaccccagccttttccagggcaaggcccaatgtcacagatgcct
caaggatttcagcagccccttcaacctcagcaaatgccaatgaatatgcctcagatgggg
cctcctggtccacaaggacagttcagacctccaggaccccaaggacaaatgggacctcaa
ggtcctccattacaccaaggaggtgcaggtccacaagggttcatgggaccacaaggacct
ccaggcccccaagggcctccacaaggaatgccacggcctcaggatttacatggacatcaa
ggaatgcagagacatcctggccctcatgggccaatgggacccccaggtccacagggtaat
gctggcccacaaggccacttaggaccacagggtctacctgggtctcagactcatttagga
ccacagggtccacctggccctcaaggtcacttgggtcctcaaggtccccctggtggtcaa
ggaatgcaagggccacccggtccccgaggaatgcaaggacctcttcctcatggcatgcaa
ggagctccaggatctcaagggatgcagggccctatatctcaagggcctttgatgggactt
aatccaagagggatgcagggtccaccaggacccagagataaccagggacctactccacaa
gggatgatgatgggtcatccgcaagaaatgaggggtcctcatatgcaaagtggtttgcta
ggacatggtccccaggagatgaggggcctccagggacccccgcctcaaggtacaatgtta
ggaccgccacaagaattgcgtgggccacaaggccagcagggacctccacaaggctcttta
gtagggcctcaaggaaacatgcaaggacctcagggacaaccgaacccttcaagggggccg
cacccttcccagggccctctgcctttccagcagcagaaaacacctctgttgggtgatggg
cctcgccccccatttaatcaggatggacagaacccaggtcctccaccactgataccagga
ctggggcagcagggaggacaaggtcgtcttggccctcacaaccaaggacctggtcttaat
aaaggtgactcccgtggcccaccaaaccatcacatgggccctctctcagatagaaggcac
gaccagaacagtggtggtcctgatcatgggcctgagagagggttgtttcgaggtggccag
gagtggggtgatggtagagacagcaggggcatgccagatagacgaggacctcacccagat
ttccatgatgactttgatcgaccagatgacttccgtgacgacttccatccagataagaga
tttggccatcgattacgggaatttgaggggagaggagggccaccattgcaagacgaaaaa
tggagacgaggtggacctgggcctccctttcctcctgatcacagggaatttgaaggaggg
ggttcaaaccgtgggcctcctggtgcttgggaaggacggagaccttcagatgatagatat
ccacgggatcctgacgatgcacggttccgaggaagacgagatgagagcttcagaagagga
ggaccctcgagacatgagggccggggtcccagggggagagatggctttcctggccctgaa
gattttgggccagatgacacttttgactctccagatgaaaactcaagaggaagggaccat
ggtgttcgggggcgaggtcgtggtgctcttagaggaggccggaagggtttacttcctact
ccagatgaatttccacgctttgaaggagggcggaaaccagaatcctgggatggaaacaga
gaaccaggttcccgtccagatcaccctcctcacgatgggcattctccagctaacagagaa
cgttcttcttcgctccagggcatggacatggcctcattgccaccacgtaaacgtccctgg
catgatggaccagggacctctgaccacagagaaatggatgctccaggtggacccccagag
gagaggggcaaaggaagaggaaattcaggaccttcacagagagcgccaaaatctggaaga
tctagttctttagatggagaccatcacgatggattccacagggatgaagcttttggtgga
ggccctgcaggaggcaataacccttctcgaggaggaaggagtggaagtaattggggaaga
ggaaataacatgaactctggtcagtcaagaagaggatcatctaggggtggtggaagaggc
cgatag

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