Phalacrocorax carbo (great cormorant): 104045057
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Entry
104045057 CDS
T08596
Symbol
SMG5
Name
(RefSeq) protein SMG5
KO
K11125
protein SMG5
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104045057 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104045057 (SMG5)
03032 DNA replication proteins [BR:
pcao03032
]
104045057 (SMG5)
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
104045057 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
104045057 (SMG5)
DNA replication proteins [BR:
pcao03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
104045057 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
104045057
NCBI-ProteinID:
XP_009503279
LinkDB
All DBs
Position
Unknown
AA seq
1038 aa
AA seq
DB search
TTCYSETLLSVLLCRAVVEAVHRLDLILGNKAAYQEVFKPENISLRNKLRELCVKLMFLH
PVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQHLLLYIQ
SHYQLELQCCIDWTHVTDPLIGCKKPVSASEKEMEWAQMACHRCLVYLGDLARYQNELAG
VDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEATYCYLRCIQSEVSFEGAYG
NLKRLYDKAAKMYHQLKKCETRKLSPSKKRGKDIKRLLVSFMYLQSLLQPKSSSLDSELT
SLCQSVLEDFNLCLFYLPSPPNMSSTSEDEEEYESGYSFLPDLLIFRMVIICLMSVHSLK
RAGSKQYSAAIAFTLALFSHLINHVNIRLQAELEEGENPVPAFQSDGTDDQEPREPLNSI
EKEAEADLANHQPSEEQRKNDCKKSKKYSRLSCLRRRRHPQKVDESDLSEGFDSDSSQGS
TKGSDGSESGSEKSHEEAEAAFDVETDSDMNSQESRSDLEDMEDEPGEEGSVRGKSGPKE
ALKNCVDGSGLGDSKSPSISKIEAPDPAVNGPASLSTNDTSIASNLQAMSTQLFQTKRCF
RLAPTFSNILLKPSSEPPILKDGLESKPCVNGDLEKPGLTEQDDVSDSEESISSNKSCRN
ERSLQEKLEIVTNEGLLLTVKVFLDWLRTNTDLIIMCAQSSQSLWNRLSVLLNLLPSAAD
LQESGLALCNEVKDVLSGAELPDLKANLLLPEDVALRNLPPLKNAHKRFNFEQDRPIFSA
VEESVVRICCIRSFGHFITHLQGSILQFNSELGIFISIAQSEQDNLLHQAQAQFHMAAEE
ARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCQHLAVVKQLATSG
RFIIIIPRTVIDGLDFLKKENAGARDSIRYLEAEFKKGNRYIRCQKDVGKSFERHKLKRQ
DVDAWNLYKILDSCKQLTVSQGSGEEDTTGMVTIITGFPLEDPSTFSAPMQSAIQAAANA
SVEIKNVLEFYKQWKEMG
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
acaacctgctattctgaaactcttctttctgtgttactttgcagagcagtggtagaggcc
gttcatcgattagatctcatccttggtaataaggcagcgtatcaagaagtgttcaagcca
gagaacatcagcttgaggaacaagctgcgggagctgtgtgtgaagctgatgttcctgcat
ccagttgattatggaagaaaagcagaagaattgctctggagaaaagtttactatgaagtt
atccagctcattaaaacaaataaaaagcacattcacagccgtagcactctggagtgtgcg
taccggactcacttagttgctggcataggattttaccagcaccttctcctctacatccag
tctcactatcagctggagctgcagtgctgcattgactggacgcacgtaacggaccctcta
ataggctgcaagaaacctgtgtctgcatcagagaaggagatggagtgggcacagatggca
tgtcacagatgtctggtttatctgggagatctagctcgctatcagaatgaactggcaggt
gtggacacggagttgctggctgagcggttttactatcaagccctttctgttgcaccacaa
attggcatgccctttaaccagctggggacattggcagggagcaaatactacaacgtggaa
gctacctattgctacttacgctgtatccagtctgaagtgtcctttgaaggtgcctatggg
aacctgaagcggctgtacgacaaagcagccaaaatgtatcaccagttgaagaaatgtgaa
accaggaagttgtctccaagcaagaaacgaggcaaagacattaagaggttgctggtgagc
tttatgtacctgcagagtcttctgcagccaaaaagcagctctctggattctgagctgaca
tctctctgccagtctgtgctggaggatttcaacctgtgcttgttctacctgccctcacct
cctaatatgagctcaactagtgaagatgaagaagagtatgagagtggctactccttcctt
cctgatctcctgatctttcgcatggtgatcatctgccttatgagtgttcacagcctcaag
agagcaggttcaaagcagtacagtgcggccatcgctttcacgctggccctcttctctcac
ctgataaatcacgtcaatattcgcctgcaggcagagctagaagaaggggaaaatccagtc
ccggcctttcagagtgatggcacagatgaccaggagccgcgggagcccttgaactcgatt
gagaaggaagctgaagctgacttggccaatcaccagcccagtgaggaacaacggaaaaat
gactgcaagaaaagcaagaaatactcccgcctctcctgtttgcgccgccgccgccacccg
cagaaggtggatgagagtgacctgagcgagggttttgactctgactccagccagggctcc
acaaagggcagcgatggctcagaaagtggctcagagaagagtcatgaggaagcagaagct
gcttttgatgtggagacagactctgacatgaacagccaagaatctcggtccgacttggag
gacatggaggatgaaccaggtgaggagggaagcgtccgaggcaaaagcgggcccaaagag
gccttaaaaaactgtgtggatggcagtggactgggggactccaagagcccaagcatctct
aaaattgaggctccagatccagcagtcaatgggccagcttccctgagcactaacgacaca
agcatagccagtaatctccaggccatgtctacccagctgtttcagaccaaacgctgcttt
cgcttggctcccactttcagcaacatccttctgaaaccaagcagcgaaccacccatcttg
aaggatggactagaaagcaagccatgtgtcaacggagatctggagaagcccggcttgaca
gagcaagatgatgtgtctgactctgaggaaagcatttcaagtaacaaatcctgcaggaat
gagcggtcccttcaggagaagctagagatcgtgaccaacgaagggctgcttctcactgtc
aaggtgttcctggactggctgaggacaaacacggacctcatcatcatgtgtgctcagagc
tctcagagcctgtggaacaggctgtctgtgctcctgaacctcctgccttctgctgcagac
ctgcaggaatcagggctggccctatgtaatgaagtcaaggacgttctgagtggtgctgag
ctcccggacctgaaagccaacttgctgctcccagaagatgtggccctgcgaaatcttccc
cctctgaaaaacgcacacaagaggtttaactttgagcaggacaggcccattttctcagca
gttgaggagtccgttgtccggatttgctgcattcggagctttggccacttcattacccac
ttgcaaggcagcatcctgcagttcaactcggagctcgggatcttcatcagcatagcacag
tcagagcaagacaacttgctgcaccaggcccaagcccagtttcacatggctgcagaggaa
gctcgtcggaacaggctaatgagagatatggctcagcttcgcctgcagctggaggtttct
cagctggagggaagtctccagcagcccaaagcacagtcagccatgtctccttatcttgtc
ccggacacccaggccctctgccagcacctggctgttgtcaagcagctggccaccagcggg
aggttcataatcatcatccctcgcacagtgattgatggcttagacttcctgaaaaaggag
aacgcaggcgctcgggacagcatccgctatctggaggcagaatttaaaaagggaaacagg
tacattcgttgccagaaagatgttgggaagagctttgagaggcataagttgaagagacaa
gatgtagatgcctggaatctctataaaatactggacagctgcaaacaactgacggtgtcg
caaggaagcggagaggaggacaccacgggaatggtcaccatcatcacgggctttccactg
gaggacccaagcacgttctcagcacccatgcagtctgccatccaggcagccgccaatgcc
agcgtagaaataaaaaatgttctggagttctacaagcagtggaaagagatgggctga
DBGET
integrated database retrieval system
