Phalacrocorax carbo (great cormorant): 104045463
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Entry
104045463 CDS
T08596
Symbol
CSTF1
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104045463 (CSTF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104045463 (CSTF1)
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
104045463 (CSTF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
CSTF1_dimer
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_NWD2_C
Beta-prop_NUP159_NUP214
Beta-prop_VPS8
PROPPIN
VPS8_N
Beta-prop_WDR11_1st
Ge1_WD40
Beta-prop_WDR75_2nd
Beta-prop_HPS5
Frtz
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
104045463
NCBI-ProteinID:
XP_009503730
UniProt:
A0A093QR94
LinkDB
All DBs
Position
Unknown
AA seq
431 aa
AA seq
DB search
MYRTKVSLKDRQQLYKLIISQLLYDGYINIANGLINEIKPQSVCAPSEQLLHLIKLGMEN
DDSAVQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPT
LRLYDINTFQCFVSCNPQDQHTDAICSVNYNASANMYVTGSKDGCIKLWDGVSNRCITTF
EKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVKYTGAGLSGRQVHRTQAV
FNHTEDYVLLPDERTISLCCWDSRTAERRNLLSLGHNSIVRCIVHSPTNPGFMTCSDDYR
ARFWYRRSTTD
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtatagaacgaaagtcagtttgaaagaccgccagcaactttataaactgataattagt
cagctgctatatgatggatacataaatattgccaatggcctgataaatgagataaaacca
caatcagtctgtgcaccatctgaacaactgctgcacctaattaagttaggaatggagaac
gatgacagtgctgttcaatatgcaattggacggtcagatacggtagctccaggcacagga
attgacttggaatttgatgcagatgtacagaccatgtctcctgaggcttccgaatatgag
acttgttatgtcacatctcataaaggaccatgtcgcgtagcgacgtatagcagagacgga
cagttaatagctacaggatctgctgatgcctcaataaaaattcttgatacagagagaatg
ttggccaaaagtgctatgcctattgaggtcatgatgaatgagacagcacagcaaaacatg
gaaaatcaccctgttattcggactctgtatgatcatgtggatgaagttacgtgtttagct
tttcatccaacagaacagatcctagcatctggttcaagggactacacacttaaattgttt
gattattcaaaaccttctgccaaaagagccttcaaatatatccaggaagcagagatgttg
cgctcaatttcttttcacccttctggagatttcatacttgttggcacccagcaccctact
ttacgactgtacgatatcaatactttccagtgttttgtgtcttgcaatcctcaagatcag
cacactgatgctatatgttcggtaaattacaacgcaagcgcaaacatgtatgtgacggga
agcaaggacggatgcatcaaactgtgggatggtgtttcaaatcgctgtattactactttt
gagaaggcacatgatggagctgaagtctgttctgctattttttccaaaaattcaaagtat
atcttgtcaagtggaaaagactctgtagctaaactgtgggagatatccaccggtcgcacg
ctggtcaaatacacaggagctggtctgagcggacggcaagtacacaggacgcaagctgtc
ttcaaccacacagaagactatgtgctgcttccagatgaaaggaccataagcctctgctgc
tgggattcaagaactgctgaacggagaaaccttctttctctggggcacaacagcattgtc
cgctgcattgtccattccccaaccaatcctggcttcatgacctgcagcgacgactaccgg
gctaggttttggtacagaaggtcaacgacggactga
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