Phalacrocorax carbo (great cormorant): 104045570
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Entry
104045570 CDS
T08596
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104045570 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcao03032
]
104045570 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
pcao03400
]
104045570 (TOPBP1)
DNA replication proteins [BR:
pcao03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
104045570 (TOPBP1)
DNA repair and recombination proteins [BR:
pcao03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
104045570 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
104045570
NCBI-ProteinID:
XP_009503853
LinkDB
All DBs
Position
Unknown
AA seq
1520 aa
AA seq
DB search
MKGSKEPFFVKFIKSSGSSEYFLKALESIKEFQSEEHLQILEEEAALNIKENDKSLYICD
PFRGVVFNHLKKLGCRIVGPQVVLYCMQSQRCVPRAEYPVYNMTMADVTVSCTSLDKDVR
EEVHKYVQMMGGRVYRDLNMSVTHLIAGEVGSKKYLVAASLKKPILLPSWVKTLWDKSQQ
SIMRYTDVNMEDYACPVFLGCTICVTGLSSSDRKEVQRLTAEHGGQYTGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVSVQWFSDSIKKGFCQDETIYKIEAGSKLSSTPSTSTPTHR
AGKPDDHALPDVSHISNINLSGVNETAYSSAMSSRLDPLPDELENLDISSFQAPEDLLDG
CRIYLCGFSGRKLDKMRRLINCGGGVRFNQLNEDVTHVILGENNDKLKHFLEKAAHRPHV
VTAKWLLESFIKGYLHPVEQYIPLNYQPLENPILERPGMKSIPPRKNSLLKKEPVDVIKH
QKAAEDDFLSLYVNNDSTSVENLTSRTFNDVTHLAVQGEDQSSVCNGSLGESSAVVEGGL
FVRKRFLLLGFGEEDESYIADIIKENAGKILPLQSRTIADYAVVPLLGCTVKPTVGDVVT
NTWLITCVEQQLLLDPQSNPLFTPVPVMEGVTPLEDCVLSFSQFTGVERDSLVYLAGLLG
ARVQEFFVRKANAKKGMFASTHLVVREPDGSKYEAAKKWNLPAVTVAWLLQSARTGERAD
ERKFLVENAEAEGWLLESSITQLSKTPATIKSPDSEQPTYLLEAGKKTAVTPLDINRFQS
KAFQAVISRHTEKTTTTLAQGGLPQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALET
PRGPDQKTRKLSTPLSEVIGRNLKLALANSTRHTVALSASPQLTTVQPEVEEEPKPLAEV
VICVSKKLSKKQTELNAVAASLGADYRWCFDETVTHFIYKGGQNDNNKEYKSVKERGIHI
VSEHWLLESAREYKRLPESLFPHTYNPKMSLDISTVQDVRLSSSSKLPSTGKPAEETEII
PVDEDDAEDDVTTDQIKETVTAGEEQIVTSESKGVLTQALEMRENFQRQLQEIMSATSLV
KPQGQRGSLSRNSFDGLPTTPDSTRSVRNGRSRVLEALRQSRQALTDINTEPSQSEQIIW
DDPTAREERARLVSNFQWPNSPSQYAEQGQSNVNKNMDEPAIKGSLADAEIADIALPEAG
DGDLVEGLKNPVCRDPETPIKDHLIPTPQAPSIAFPLANPPVAPQPKEKAVTEDEKADEE
PEKHRKFQLSSLNPQERFDYCHLIEELGGIVLEKQCFDPSCTHIVVGHPLRNEKFLASMA
AGKWVLHRSYLEACRGAGCFVQEEDYEWGSNSILNVLPGINVNQKKLALAAMRWRKKIHK
GRQETGITEGAFSGWKVILNVDQSKEAGFRRLLQSGGAKVFSGHSVSLFKEATHLFADFS
KLKPDDTRVNVAEAAAQGVNCLKPEYIADYLIQDPPPPMESYCLPEAQSYLQNNAELGTG
VSQKRKALGEMSRVKRSRIH
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtagtaaggagccattttttgtgaaattcataaagtcttctgggagctcggag
tattttcttaaagctcttgagtctataaaagaatttcagtcagaagaacatctccaaatc
cttgaagaagaagcagcactcaatataaaagaaaatgataaatcactttacatttgtgat
ccttttagaggtgttgttttcaatcatcttaaaaagcttggttgtagaatcgttggacca
caggtagtcctgtactgtatgcagtcccagcgatgtgtcccaagagctgagtatcctgtg
tacaatatgactatggccgatgtaacagtatcctgtaccagccttgacaaagatgttagg
gaagaagttcataagtatgtgcagatgatgggtggacgtgtgtacagagacctcaatatg
tcagtaactcatcttatagctggagaagttggcagcaagaaatacttagtagctgcttct
ctgaaaaagcctatcttgcttccctcttgggttaagacactgtgggataagtctcagcaa
agcataatgagatacactgatgttaacatggaagactacgcttgccctgtgttccttggc
tgtacaatttgcgtaactggcttaagtagttcagacaggaaggaagtccagcgcctcact
gctgagcacggtgggcaatatacggggcagctcaagatgaatgaatgtactcacctcata
gttcaagagccaaaaggtcagaagtatgaatgtgccaaaaaatggaatgtgcactgtgtg
tctgtgcagtggttttctgacagcattaagaaaggcttctgtcaggatgagacaatatat
aaaatagaggctggatcaaaactgagtagtacacccagtacgtcaacacctacacatcgc
gctggcaagcctgatgatcatgcccttccggatgtcagccacatttccaatatcaatttg
agtggtgttaatgaaacagcatatagttctgctatgagcagcagactcgatcctcttcct
gatgagctggaaaacttggatataagttcttttcaagcccctgaagatttgttagatgga
tgtcgaatctatctgtgtggattcagtggccggaagctggacaaaatgagaaggcttatt
aattgcggtggtggtgttcgatttaatcaacttaatgaagatgttacccatgtcattttg
ggggaaaataatgataagttgaaacactttttggaaaaggcagctcacaggcctcatgta
gtgacagcaaaatggttgctggagtcatttattaaaggttatctacatccagtcgagcaa
tatatccctctaaattaccagccgttagagaacccaattttggagcgacctggaatgaag
tcaattcctcccagaaagaacagtctcttgaagaaagaacctgtggacgttataaagcac
cagaaagctgctgaagatgacttcctctctctctatgtaaataatgattctacatcagtt
gaaaatctaacatccagaaccttcaatgatgttactcacttggctgttcaaggagaggat
cagtcttctgtctgtaatggttctttgggagagtcttctgcagtggttgaaggaggctta
tttgtcagaaagagatttcttcttttgggttttggtgaagaggatgagtcctacattgca
gatattataaaggagaatgctgggaaaattctgccgctgcaaagcagaaccattgcagac
tatgctgtggtacctttattggggtgcacggtgaagccaactgttggtgatgttgtcaca
aatacatggctgataacatgtgtggaacagcagctccttttagatccccagtccaatcca
cttttcacaccagtcccagtaatggaaggagttacccctctggaggattgtgttctttct
tttagccagttcactggtgtagaaagggactccctggtttatctggcaggactgctggga
gcaagagtccaagaattctttgtgcggaaagccaatgcaaaaaagggaatgtttgccagc
acccatcttgtggtgagagaaccggatggttccaagtacgaagctgcaaagaagtggaat
ttgccagcagtcactgtagcttggcttttacagtcagcaaggacgggagagagagcagat
gaaagaaagttcttggttgaaaatgcagaggctgaaggttggttattagagagttccatt
actcagcttagcaagacaccagcaactattaaatctcctgattcagaacaacctacttac
ctccttgaagctgggaaaaaaacagctgtgacccctcttgatatcaacaggtttcagagt
aaagctttccaagctgtgatctcccgtcatactgagaagacgacaaccactcttgcacaa
ggggggctgccacagaaagaaccatctctacatcttgatacaccgtcaaaatttctttcc
aaagacaagttattcaagccttcttttgatgtaaaggatgctctggcagctttggaaact
ccaagaggtcctgatcaaaaaaccaggaaactgagcacacctctctctgaagtcattggc
agaaacttgaaattggcactggcaaacagcacaaggcatacagtagctcttagtgccagc
ccccagctgaccactgtacagcccgaagtggaagaagagcccaagcctctagctgaagtt
gttatatgtgttagtaaaaaacttagtaagaagcaaactgaactgaatgcagtagcagct
tctcttggggcagactacagatggtgctttgatgaaacagtaacacacttcatctacaag
ggaggacaaaatgacaacaataaggaatacaaatccgttaaagaacggggtatacatatt
gtttcagaacactggcttttagagagtgcccgagaatataaacggcttcctgaatctctc
tttcctcacacttacaatcccaaaatgagcctggacatcagcacagtgcaagatgttagg
ctctcctcctccagtaaacttccatcaactggaaaaccagccgaggaaactgagattatt
ccagtggatgaagacgatgctgaagatgatgtaactactgaccagataaaggaaacggtc
actgcaggggaagaacaaattgttacaagtgaatccaaaggagttttaacccaagcacta
gaaatgagggagaacttccaaaggcagctgcaggagatcatgtctgctacatcgctagtg
aaaccacaagggcaaagaggttccctttcaagaaacagttttgatggtttgccaactact
cctgatagcacacggtctgtgcgaaatggccgaagtagggtcttggaagccctaaggcaa
tcccgtcaggcactcacagatataaacacagagccatcccagagcgagcagatcatctgg
gacgatcctactgcgagggaggagagagcaagacttgtcagcaacttccagtggcctaat
agtccttcccagtatgctgagcaaggtcagagtaacgtcaacaaaaacatggatgagcct
gccatcaaaggatctttagctgatgcagagattgctgatatagctcttcctgaggctggg
gatggagatttggtggagggtctaaaaaatcctgtctgtagagatcctgaaacaccaatt
aaagatcacttgatccccactccacaggcccccagcattgctttcccactggctaaccct
cctgtggcaccgcagcccaaagaaaaggctgttacagaagatgagaaggctgatgaagaa
ccagaaaaacaccgtaaatttcagctgtcttctcttaatcctcaggaaagatttgattac
tgccatctgattgaggaattaggtggaatagtacttgagaagcagtgctttgatccaagt
tgcacacacattgttgtgggacatcctcttcgaaatgaaaagttcttggcttcgatggct
gcgggaaagtgggtgcttcatcgttcctacctggaggcatgtagaggagctggctgcttt
gttcaggaagaagattatgagtggggaagtaattccatacttaatgttttgcctggaatc
aatgtaaaccagaagaaactagcgcttgcagccatgaggtggaggaaaaaaattcataaa
gggaggcaagaaactggtatcactgagggagctttcagtggctggaaagtgatcctgaat
gttgaccaatccaaggaagcaggattcaggcgccttcttcagtcaggaggagcaaaagtg
ttctctggtcattctgtgtctctcttcaaagaagcaactcatctctttgctgacttcagt
aagctgaagccagacgacaccagggttaacgtagcagaggcggcagcacaaggagtgaac
tgcctgaaaccagagtacatcgcggactacctcatccaggatccacctcccccaatggag
tcttactgcctgccagaagctcaatcttaccttcagaataatgcagaacttggaactgga
gtgtcccagaaaagaaaagcactgggagaaatgagcagagtcaagcgatccagaatacac
tga
DBGET
integrated database retrieval system
