Phalacrocorax carbo (great cormorant): 104046755
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Entry
104046755 CDS
T08596
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104046755 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcao03041
]
104046755 (SF3B1)
03036 Chromosome and associated proteins [BR:
pcao03036
]
104046755 (SF3B1)
Spliceosome [BR:
pcao03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104046755 (SF3B1)
Complex B
104046755 (SF3B1)
Complex C
U2 SnRNP specific factors
104046755 (SF3B1)
Chromosome and associated proteins [BR:
pcao03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104046755 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
TALPID3
DUF2298
Motif
Other DBs
NCBI-GeneID:
104046755
NCBI-ProteinID:
XP_009505261
UniProt:
A0A093QUM0
LinkDB
All DBs
Position
Unknown
AA seq
1081 aa
AA seq
DB search
TPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGG
ATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPA
SQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEE
LDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGN
LPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKA
REFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLI
DEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPS
LLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRT
ISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYAN
YYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRM
ALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAAD
IDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNK
SAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNV
IGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELL
ELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETC
SPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLV
HRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGP
CRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYI
L
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
actcctggacatacaccatctctgcgatgggatgaaactccaggccgcgcaaagggtagt
gaaactcctggtgccaccccaggctcaaaaatatgggatccaactcccagtcatacacca
gcaggagctgcaacacctggacgggacacgcctggtcacgcaacaccaggccatggaggt
gccacttctagtgcacgtaaaaatcgatgggatgaaacacctaaaacagaaagagatact
ccgggacatggcagcggatgggctgagacgcctcgtacagatagaggtggtgactccatt
ggtgagacaccaaccccaggagcaagtaaaagaaagtcacgatgggatgaaacacctgct
agccagatgggtggcagcactcctgttctgacacctggcaaaacacccattggtacacca
gctatgaacatggcaactcctacaccaggtcatatcatgagcatgactcctgaacagctg
caggcttggcgttgggaaagggaaattgatgagagaaacagaccactttctgatgaagaa
ttggatgctatgtttccagaaggatataaggttcttcccccaccagctggttatgtacct
attcgcactccagctcgtaagcttacagcaactccgacacctttgggtggtatgactgga
ttccacatgcagacagaagaccggactatgaagagtgttaatgaccagccatctggcaat
cttccattcctaaaaccagatgatatccaatacttcgacaaactgctggttgatgttgat
gagtcaactctgagtcctgaagaacagaaggagaggaaaataatgaaattacttctgaaa
ataaagaacggcacacctcccatgagaaaggctgcattgcgacaaattaccgataaagct
cgggagtttggagcagggccgttgtttaatcagatcctgcctctgctgatgtcaccaacg
cttgaagatcaggaacgtcacttgcttgtgaaagtcattgacagaattctttacaaactg
gatgacttggtccgaccgtatgtacacaagatccttgtggtcattgaaccactgctgatt
gatgaagactactacgctagagtggaaggcagagaaataatttcaaacttggctaaggct
gctggtttggcaacaatgatctccacaatgcgacctgatattgataacatggatgagtat
gtccgaaatacaacagctcgagcctttgctgtcgtggcctctgctttgggcattccttct
ctgctacccttcttgaaagctgtctgtaaaagcaaaaaatcctggcaggctaggcatact
ggcatcaagattgtacagcagattgctattcttatgggttgtgctatcttgcctcatctc
aggagcttggttgaaattattgaacatggtctggtggatgagcagcagaaagttcgtacc
atcagtgctttggctattgctgctttggctgaggcagctactccctatggtattgagtca
tttgattctgttctgaagcctttatggaagggtatacgtcaacacagaggaaagggtttg
gctgccttcttgaaggctattggttacctgattccactcatggatgctgagtatgcaaac
tattataccagagaagtcatgctaatccttatcagagagttccagtctcctgatgaagaa
atgaaaaaaattgtgttgaaggtggtaaagcagtgttgtggtacagatggtgttgaagca
aactacattaaaacagaaatcttgccgccttttttcaaacacttctggcagcacagaatg
gcattggacagaagaaattacagacagctggttgatacaactgtggagctggcaaataaa
gttggagctgcagaaattatttctagaattgtggatgatctgaaagatgaggctgagcag
tacagaaaaatggtgatggagacaattgagaagataatgggaaatctaggggcagcagac
attgatcataaactggaagaacaacttattgatggtatcttgtacgcctttcaggaacag
accacagaggattctgtgatgctgaatggttttggcacagtggttaatgctctaggcaag
agagttaaaccctacttgccacaaatctgtggtacagttttgtggcgtttgaacaacaaa
tcagctaaagttaggcagcaggctgctgacctgatctctcgtactgcagttgtcatgaaa
acttgccaagaggaaaaactgatgggacacttgggtgttgtcttgtatgagtacctgggt
gaagaatatcctgaagtactgggcagcatactcggagcacttaaggctattgtgaacgtt
ataggtatgcacaagatgacgcccccgatcaaagatctgctgccacggcttacacctatt
ttgaagaacagacacgagaaagtacaggaaaattgtattgatcttgttgggcgcattgca
gaccgaggtgcagaatatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gaattacttaaagctcacaagaaagctatccgaagagccacagtgaacacttttggttac
attgcaaaagctattggacctcacgatgtactggctacactgctgaataacttgaaagta
caagaaaggcagaacagagtatgtactaccgtcgcaattgctattgtagctgaaacatgc
tcacctttcacagtgctgcctgcactcatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtgttaaaatctctttctttcctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagggatcttgta
cacagacaaacagccagtgccgtggtacaacatatgtctcttggtgtttatgggtttggc
tgtgaagattctcttaatcatttgttgaattacgtatggcctaatgtgtttgaaacctct
cctcatgtcattcaggcagttatgggggctctggagggcctcagagttgctatcggtccc
tgcagaatgttgcagtattgtttacagggtttgtttcaccctgccaggaaagtcagagat
gtttattggaagatttataattcaatctacatcggatcacaggatgctctgatagcacat
tatccaagaatctataatgatgaaaagaacacctatattcgttacgaacttgattacatc
ttataa
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integrated database retrieval system
