Phalacrocorax carbo (great cormorant): 104047171
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Entry
104047171 CDS
T08596
Symbol
FREM1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104047171 (FREM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
pcao04091
]
104047171 (FREM1)
Lectins [BR:
pcao04091
]
C-Type lectins
Lecticans
104047171 (FREM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Calx-beta
Motif
Other DBs
NCBI-GeneID:
104047171
NCBI-ProteinID:
XP_009505735
LinkDB
All DBs
Position
Unknown
AA seq
1811 aa
AA seq
DB search
MKPFEKSWWFLLLPVVLRVVGSSFISVNPGVKVMKGQSVFLSEDDLKFSIPREKDVCKVE
VVINEPITQRVGKLTPQVFDCHFLPNEVKYTHNGCPILDEDTVMLRLYRFTETETFVETF
TLHVQLLEPDCNIIKMRSRALEVPEYYGLSRVIDKNVLAFDYDRKINLDCTISIASSESH
LPAYGQLITGEVQRKQLRGDQPQSFFPGPTDSLGQQCRNGSCLLGQGVIHNKKMSCEEFL
RLGIRYQHLDPPSPDTDYIPVRLDLTDRRSKTLHKTEYAWLPVQIKGAIPNQIPKAAPMA
KFMLEVDQFILTPITTSIIDAEDNETPKSLLVFNITKPPPRGFITHLSDHTKAVGSFTWK
DLSDMLIAYQPPNSSHTERRNYEMEFEVHDFYFERSLAITVRLSIRTADTNAPRVSWNTG
LNLLEGQSRPITWQHFQVVDNDDIQNVRLVTVDGLQHGRLTVRGGKGFMFTVSDIQAGVV
HYHHDDSDSTKDFVVFRIFDGSHSIRHKFPINILPKDDSSPFLISNVVIEVHEGQTILIQ
GSMLHAADMDSSDDYILFNITKPPQAGEIMKKPEPNLIGYSVSSFLQRDLFNGIIYYHHL
GGEIFEDSLEFVLCDSHDPPNLSEPQVMMVHIIPVDDQLPREAPGVTRHLVLKETEIAHL
TKKHLHFIDVEEQDRELTYTITTSPFFSCTHGHSDAGKLFMADTILKLVKDPAALALQSF
TQHAVNYMKVAYMPPLQDIGPEPQQVQFIFSVSNQHGGTLYGICFNITILPVDNQAPEVF
TSHLRVEEGGLSPVTEGHILVSDVDTKQEHLLLLLQRQPQHGAVELDGIPMNEGDRLSCG
DLRTLAVRYRHDGSETLTDDVLFAATDGIHFVEFILQVKVLPVNDEPPVMRTGLVPVLHC
LEGEEVVLSSEYIYATDADSDDMKLTLMLARQPYHGIVRKAGIAVDHFSQADVISGLVTY
KHTSGEIGLTPSVDILTFIVSDDEAGLDVKGCCYEGPLPPPVPLHDPSPVYDLNITILPV
DNQPPLIAAGVKFVVEEGSSAAITTNHLFAIDPDTTADDLEFVLVSPPQFGYIENILPSP
GFEKSNIGISIASFQMKHLKALNINYVQARHMRMEPTADHFVLYVTDGLHRSADTPFFVL
INPTNDEVPEFIARNITVQEGEMKELDLSVINAVDLDVPQDHLVFGVVQRPWYGFLINGV
HGNDILHYKQLINHNHHSHGLLVHDFSMELLKNGMKLMYMHDNSENLTDSFKIQLSDGKH
KVLRTISVEVIPVNDEKPVLSKKDDIEVNMGETRIISSAVLSAEDKDTPRERIYYLFERI
PENGQLQLKVGQGWMTLQTGMKCTQEELDMNLVRYVHTGAIGSKNKDSFTFFLWDGYNRS
PAVEFYINIKDMEKGDIAVFIKPLRVPKGDWAYIKTDVLLALDGTDKPEELLYVITSPPQ
YGQIEYVGYPGIPITSFSQMDVARQIVCYVHNTKAAVPEDSFRFIISNGLRTKHGTLMIS
LEPADQALPTLSRNMGLRLVEGAMALLSPDVLQLSDPDTAKENLTFLLAQLPQYGHLYYR
GAVLLQYNFTQQDVDNRDVAYKHRGGDSQIDRFTFVATDGTNQGFIMNGRVQSEPVAFSI
QVDHLDKMAPKIIHLHCFSDVELLKNGNYGIYITARSLKASDPNTKDDKIVFKILRGPRY
GYLENITTGGFIQEGFSQKDLNSKIILYVINPSCEVNSDSLEFQVTDASGNSAVPQRLEL
RWSRIEMQQTEYEVCESVGVVSLKITRAGHSAESAFITVKVNEVSAMLGKDFTVTPSKLV
QFDPGMNQCTE
NT seq
5436 nt
NT seq
+upstream
nt +downstream
nt
atgaagccctttgagaaaagctggtggtttctacttctgcctgttgtactaagagttgta
ggttcctcctttattagtgtcaaccctggggtgaaagtgatgaagggacaatctgtcttc
ctgtcagaagatgacctcaaattttccatccccagagagaaggatgtctgcaaagtagaa
gttgtgattaatgagccaataacacaaagggttgggaaactaactccgcaggtttttgac
tgtcacttccttcctaatgaagtcaaatatacccacaatggctgtccaattttagatgaa
gacacagtcatgcttaggctgtacaggttcacagaaactgaaacatttgtagaaacattc
accctccatgtgcagttacttgagccagactgtaacatcattaaaatgcgctcccgtgcc
ctggaggttcctgagtactatggtctgtccagggtgattgacaagaacgtcctcgctttt
gactatgacaggaagataaatctggattgcaccatttctatagcttcttcagaaagccac
ttgcctgcttatggccagctcatcaccggggaagtgcagcgaaagcagcttcgtggagat
caaccacagagcttcttccctggccctacggacagcctgggccagcagtgcagaaatggg
agctgcctgctgggacagggagtcattcacaacaaaaaaatgagctgcgaagaatttctg
aggctggggattcgatatcagcaccttgaccctccatcacctgacactgattatattcct
gtaaggctggatctcacagacagaagaagcaaaacactgcacaagactgagtatgcatgg
ctccctgttcagattaaaggtgctattcccaatcaaatacccaaagctgccccgatggca
aagttcatgctggaagtagatcaatttattttaacccccattacaacctcaatcattgat
gctgaagacaatgaaactccaaagtccctgcttgtattcaacattaccaagccccctcca
cggggcttcatcactcatctgtccgaccatacaaaagctgttggctccttcacctggaaa
gatctcagtgacatgctcattgcttatcagcctccaaatagcagccacacagagaggagg
aattatgagatggagtttgaggttcatgatttctactttgaaaggagtttagcaatcact
gtgcgtctttctatcagaacagcagatacaaatgctcctcgggtttcatggaacacaggg
ctcaacctcctggaagggcaatcccgaccaatcacatggcaacacttccaagttgtagac
aatgacgacatccaaaatgttcgcttggtcacagttgatggcttacagcatgggaggctc
acagtgagaggagggaaaggtttcatgttcacagtctctgacattcaggctggagttgtt
cactaccatcatgatgacagtgattctactaaggactttgtggtatttaggattttcgat
ggctcccacagtattcgacataaatttccaatcaatatcctccctaaagatgacagctct
ccatttcttatcagcaatgtggtcattgaagttcatgagggacagacgatcctgattcag
gggtccatgcttcatgctgctgacatggattccagtgatgattacatactattcaatatt
accaagccacctcaggctggagaaatcatgaagaaaccagaaccaaacttaatagggtat
tctgtcagcagttttcttcagagggatctatttaatggaataatttattatcatcatttg
ggaggagaaatatttgaagattcccttgagtttgtgctgtgtgatagccatgaccctccc
aatctctcagagccacaggtgatgatggttcacataatccctgtggatgatcagctaccc
agagaagccccaggagtgacccgtcacctggttcttaaggagactgagattgctcaccta
actaagaaacatctccacttcatagatgtggaagagcaagacagggaactcacatacacc
ataaccacttccccgtttttctcctgtacacatggccactcagacgctgggaagctgttt
atggcggacaccatcctgaagctggtcaaggatcctgctgctcttgcactgcagtcattt
actcagcatgctgttaactacatgaaagttgcctacatgccaccgctgcaggacattggg
cctgaaccacagcaagtccagtttattttttctgtcagcaatcagcatggtggcactttg
tatgggatctgcttcaatattacaattcttcctgtggacaatcaagccccagaggttttt
acaagccatttgagagttgaagaaggtggcctaagccctgtcacagagggacacattctc
gtctctgatgtggacacaaaacaggagcatctcctcctcctcctgcagagacagcctcag
cacggggcagtggagctggatggcattcccatgaatgaaggtgacaggctttcctgtggg
gacctgcgtacactggcagtcagatatcggcatgatggctctgagactctcactgatgat
gtcctctttgcagccacagatggcatccactttgtagagttcatcctgcaggtcaaggtc
ttgcctgtgaatgacgagccacctgttatgcgaacaggccttgttcctgtgctccactgc
ctggagggtgaagaagtggtcctctcctctgagtatatttatgccacagatgcagacagt
gatgacatgaaactgacgttaatgctggctcgccagccctaccatggaatagtgaggaaa
gctggcattgctgtggatcacttctcccaggctgatgtgatctctggtttagtcacatat
aagcatactagtggggagattggcctgactccttccgttgatatcttaaccttcattgtc
tctgatgacgaggctggtctagatgtgaaaggctgctgttatgaaggacctcttcctcct
ccagttccgcttcatgatccatctccagtatatgaccttaacatcactatacttccagtg
gacaaccagcctccattaattgcagctggtgtgaagtttgtggtggaggagggctcctcg
gcagccattactaccaaccatttgtttgccattgaccctgacaccactgcagatgactta
gagtttgtcttggtttctcctccccagtttggttacattgaaaatatactgccttctcct
gggtttgagaagagcaacattggtataagtatagcttcgtttcagatgaagcacctgaaa
gccctgaacataaactatgtacaagccaggcacatgcgaatggaaccaacagcagaccac
tttgtactttatgtcactgacgggctgcatcgctcagcagacactccatttttcgtgctg
ataaacccaaccaatgatgaagtcccagaattcatagcaaggaatattaccgttcaagag
ggggagatgaaagagctggatctctctgttatcaatgcagttgatctggatgtgcctcaa
gaccatttggtatttggcgttgtgcagaggccctggtatgggttccttattaatggagtt
catggcaatgacattctacactataagcagttaattaaccacaaccaccacagccatgga
ttgcttgttcatgacttttccatggagctactgaagaatggaatgaagctgatgtacatg
catgacaattcagaaaacctcactgacagctttaaaatccagctctcagatgggaaacat
aaagtcctcagaaccatttcagtagaggtcattccagttaatgatgagaaaccagtgcta
agcaagaaggatgatatagaggtgaacatgggtgaaactcgaataatttctagcgctgtt
ctgtcagcagaagataaagatacccccagggagagaatttactacttatttgaaagaatt
ccagaaaatggtcagcttcagctcaaggtaggccaaggctggatgactctccaaactgga
atgaagtgcactcaggaagaactggatatgaaccttgtgagatatgtccatacaggagct
atagggtccaagaacaaagacagcttcacattttttctgtgggatgggtacaatagatcc
ccagctgtggaattctacataaatatcaaggatatggaaaagggagacattgctgttttt
ataaaaccccttagagtgccaaaaggggactgggcgtacattaaaactgatgtccttctt
gcactggatggtactgacaagccagaggagctactttatgtcataacctccccaccccag
tacggacaaatagagtatgtcggctatcctggcatccccattacgagcttcagtcaaatg
gatgtagcaagacagatagtctgctatgttcacaacacaaaggcagctgttcctgaagat
tcattcagattcatcatcagcaatggactgaggactaagcatgggacactcatgatctcc
ttggagccagctgaccaagctttgccaacactatctagaaacatggggttaagattagtg
gaaggtgctatggctctcctttctcctgatgtcctgcagctttcagacccagacactgcc
aaagaaaaccttaccttcctcttggctcagctcccccagtacggtcatctctattatcga
ggggctgtgctactacagtacaatttcacgcagcaagatgtggacaacagggatgttgca
tacaagcaccgaggtggggattcccagattgacagatttacatttgttgcaacagatggg
actaatcaaggcttcatcatgaatgggagggtgcagagtgagccggtggcattcagcatt
caggtggatcatttggacaaaatggcaccaaaaattattcatctccattgcttttctgat
gtggaactgctgaagaatggcaattatggaatctatattactgccaggtccctgaaggca
tctgaccccaatacaaaagatgacaaaatagtttttaagattttacgaggtcctcgttat
ggctacctggaaaacataacaacaggtggatttattcaggaaggttttagccaaaaggat
ttaaacagcaaaatcatactttatgtcatcaatccatcttgtgaagtaaattcagacagt
ttggagtttcaagtcacagatgccagtggaaactctgcagtgccccaaaggctggagcta
cggtggtctcggattgaaatgcaacagactgaatatgaagtgtgtgagagtgtgggagtt
gtgtctctgaaaatcaccagggcaggacactctgcagagtccgcctttatcacagtgaag
gtcaatgaagtatctgctatgctgggaaaggactttactgtgactccctccaagcttgtt
cagtttgatccaggtatgaaccagtgcactgaataa
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integrated database retrieval system
