Phalacrocorax carbo (great cormorant): 104047259
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Entry
104047259 CDS
T08596
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
pcao
Phalacrocorax carbo (great cormorant)
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcao03400
]
104047259 (PMS1)
DNA repair and recombination proteins [BR:
pcao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
104047259 (PMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_mis_repair
HATPase_c_3
HATPase_c
HMG_box
Motif
Other DBs
NCBI-GeneID:
104047259
NCBI-ProteinID:
XP_009505844
LinkDB
All DBs
Position
Unknown
AA seq
933 aa
AA seq
DB search
MKQLSTETIRLLSSSQVITSVVSVVKELIENSLDASATNIDIKLENYGFNKIEVRDNGNG
IKVDDVPVMAIKHYTSKISSSEDLERLTTYGFRGEALGSICSISEVLITTKTAADEFSTQ
YGLDSNGHITSKKPSHLGQGTTVTVLKLFKNLPVRKQFYSTNRKCKEELKKVQDLLTAYG
IIKPDLRITLTHNKAVIWQKTRVSDHKMACMSVLGTAVMGSMVPFQHCCEDPEINLSGFL
PKAESDSSLTSLSSSERSFIFINNRPVHQKEILKLIRQYYSVVTHKDCTRLYPVFFLNIT
VPASAVDVNLTPDKTQVLLHYKESVFLAVENVLKSLYGPLPAPVPGESTKTDVTSEDMFV
HRTEQTDVVVNEMGPSGNDDLHAHTSFLSFSGDVQNCQAGKNTEICLNHQSFCGDNVHSC
LEKKKVSQCDAFPDSSLNSLCEKEQNRQNITNTQSNSVPVDPKSKRADEHLLSSDNIDEI
EKNEEALVPNDLPEISADNWSMGSGLKNHLGDNLEPVKILIPEVGGTINEENEHTGEQSN
DPQISNQSIKKRNAISDKFGHVTAYDLISSRIIRKPKSAIGFFTQECRPKLITDNPKTSM
EDILXXXXXXXXXXXRGKKKNYEIKAAKDLERYDREVKKARGQTVHRPRKEAEKQKPKPK
TSPSDQQKLDKLFNAQTEKKRKPEQPTKIVTVPFSLSFCRHQLQRHEKNDADEHELFLIH
RQSFPDVWIFATEKKLMLLNPYRLEEALLCKRLLMNHKLPVEKLDKPIVLTESLIGGFQY
MAALYKMQKDYQSFNGSGYLSDPRLVANGFQIKVIEGASATESHLEIEGMANCLPYYGIS
DLKEILNAVVNRNAKEVYECRPLKVVNYLEGEAVRLARQLPLHLSKEDVQNTIYRMKQQL
GKENKGCVHGRPFFHHLTDIPEVDKHNSTEIIQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagctgtcgacagaaactattcgtctcctctcaagttctcaggtgattacatca
gttgtcagtgtggtgaaggagctgatagaaaattccttggatgccagtgccacgaatatt
gatattaaactggagaattatgggtttaacaaaatagaagtaagagacaacggcaatgga
atcaaggttgatgatgttccagttatggcaattaaacactacacctcaaaaataagctct
tctgaggaccttgaaaggttgacaacatacggtttccgtggggaggctttgggatcaatt
tgcagcatatcagaggttttgatcacaacgaagacagccgctgatgaattcagcactcag
tatggtttggatagcaatgggcatataacttctaaaaagccttcccatcttgggcaaggt
actacagtaacagtcctaaagttgtttaagaatcttcctgtaagaaaacagttttactca
acaaatagaaaatgtaaggaagaactgaaaaaagtccaagatctactgacagcatatggt
atcataaaaccagacctgaggattaccttaacacataataaggcagttatttggcagaag
accagggtgtcagatcacaaaatggcctgtatgtcagttctgggaacagccgttatgggc
agtatggtaccttttcaacattgctgtgaagatcctgagataaatctttctggatttctc
ccaaaagctgagtcagacagttctttgacaagcctttcaagttcagaaaggagttttatt
tttataaataatcgtccagttcatcaaaaggaaatactgaagttaattcgacagtactac
agtgtggtgacgcacaaggactgcacacgtttatatcctgttttctttttgaatattact
gtacctgcctctgctgtggatgtgaatttaacacctgataaaactcaagttttactgcat
tataaggaatctgtctttcttgctgttgaaaatgtgttgaaatcactgtatgggccacta
cctgctccagtccctggtgaaagtactaaaacagatgttacctcggaagacatgtttgtt
catagaacagaacaaacagatgtggttgttaatgaaatgggaccatctggaaacgatgat
ctacatgctcatacttcattcctttcattcagcggtgatgtgcaaaactgtcaagcagga
aaaaacacagagatctgcttaaatcatcagtcgttttgtggtgataatgtacatagttgc
ctagagaaaaaaaaagtttctcagtgtgatgcctttccagacagttccttaaactcgttg
tgtgagaaggaacagaatagacagaatataaccaatacgcaaagtaatagtgttcccgtg
gaccccaagtctaaaagagcagatgagcatcttctgagttctgataatattgacgaaata
gaaaaaaacgaggaagctttagtccctaatgacttacctgaaatctctgctgataattgg
agtatgggaagtgggcttaaaaaccatctcggagacaacctagaacctgttaagattttg
attcctgaagttggcggaacaattaatgaggaaaatgaacatactggtgaacaaagcaat
gatccacaaatctcaaatcaaagcataaagaaaagaaatgcgataagtgataaatttggt
catgtgacggcttatgacttaattagtagtagaataataaggaaaccaaagtctgcaatt
ggatttttcactcaagaatgtcgtccgaaattgataactgataatccaaagaccagcatg
gaggacatcctgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagaggaaaaaaaaaa
aattatgaaataaaagctgctaaagacctggaacggtatgatagagaggtcaagaaagcc
aggggacagacagtgcaccgaccaagaaaagaggcagaaaaacagaaacccaagccgaag
acttccccatctgaccagcagaagcttgacaagttatttaatgctcaaactgaaaagaag
cggaaacccgaacagcctacgaaaattgtgacagtgcctttttctctgagcttctgtaga
catcagcttcagagacacgagaaaaatgatgcagatgaacatgagcttttcctaattcat
cgtcagagttttcctgatgtctggatatttgctactgagaaaaagctaatgttgctgaat
ccatatagattggaagaagccctgctatgtaaaagattactgatgaatcataagcttcca
gtagagaaactagacaagccaattgtgttaacggaaagtcttattggtggatttcagtat
atggctgctctttataaaatgcagaaggattaccagagtttcaatggatcaggttatttg
tcagatccaaggcttgtagcaaatggattccagataaaagtgatagaaggtgcttcagct
acagaaagtcatctggaaatagaagggatggcaaattgtctgccatattatggtatttct
gatttgaaagaaattctgaatgcagtagttaatagaaatgcaaaggaagtatatgaatgt
aggcctctcaaagtggtaaattacttggagggagaagcagtacgtttagctcggcagctg
cccttacatttgtcaaaagaagatgtacaaaacacaatttacaggatgaagcaacagctt
ggaaaggaaaataaaggctgtgttcacggtcgtcctttttttcatcacttaacagatatt
ccagaagttgacaagcacaactccacggaaattattcagtaa
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