Phalacrocorax carbo (great cormorant): 104047450
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Entry
104047450 CDS
T08596
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcao03041
]
104047450 (YTHDC2)
Enzymes [BR:
pcao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104047450 (YTHDC2)
Spliceosome [BR:
pcao03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104047450 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
Ank_2
HA2_N
Ank
Ank_4
Motif
Other DBs
NCBI-GeneID:
104047450
NCBI-ProteinID:
XP_009506052
LinkDB
All DBs
Position
Unknown
AA seq
1148 aa
AA seq
DB search
VSPKTLLTFCTNGILLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQRQMN
LKLIISSAALDANLFIRYFGTCPVIHIQGRPFEVKEVFLEDILRSTGYTNKEMVKYKKEK
QREEKQQNTLTEWCSTRENNSKLESQKQRSVPRATEEYNLLDGGGDVVFNQLTEKDVNSL
EPWLIKEMDSCLSDIWLHKDIDSFAQVFHLILTENVSVDYRHSETSATALMIASGRGFLS
QVEQLISMGASIHCKSSNGWTALDWAKHFGQTEVVDVLESYSASVEFGNLDESSLVQKSG
SDLSAEDRELLKAYHHSFDDEKVDLDLIMHVLYNICHSCDAGAILVFLPGYDEIVSLRDR
ILFDDKRFADNAHRYQVFMLHSNMQTLDQKKVLKSPPSGVRKIILSTNIAETSVTVNDVV
FVIDSGKMKEKSFDALSCVTMLKMVWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNML
EFQTPELLRMPLQELCLHTKLLAPFNCPIVDFLTKAPDPPPAVIVRNAVQMLKTIDAMDP
WEDLTELGYHLTELPVEPHLGKMVVCAVVLKCLDPILTIACTLAYRDPFVLPTLASQKRA
AMLCRKRFTAGTFSDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIVGMRTQLL
GQLRASGFVRARGGADIRDVNTNSENWAVVKAALVAGMYPNLVHVDRENLVLTGPKEKKV
RFHPTSVLSQPEYKKIPPANGQAAAIEALPTDWLIYDEMMRAHRIANIKCCSVVTPVTVS
LFCGPARLPSNALQEPSSFPGDGVSNDNSDSEMEDKTTANLALLKLDEWLHLKLDPEAAG
LLFQLRQKWHSLFLRRMRAPSKPWSQVDETIVRAVTAVLSSEEQAAGLQQPTGIGQRPRP
MTAEELPTASTWRSTTSRKSSAETEFSDDSSNAEKVLMKSMRPSFQQPKKYKEKNVFHSK
RTSDDRSDQSSGKSTDSSSYPSPCASPSPISGKGSKSPSPRQNMPVRYIIMKSSNLQNID
ISQQKGIWSTTPSNERKLNRAFWESSMVYLIFSVQGSGHFQGFARMASEIGCEKSQDWGS
SGFGGVFKVEWIRKESIPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWDRIP
LAGKNASD
NT seq
3448 nt
NT seq
+upstream
nt +downstream
nt
ggtttctcctaagacactgttaacattttgcactaatggcatactgcttcggacgctaat
ggcaggagacagcactctatcaactgtgacacatgttattgtggatgaagtacatgagag
ggatagattcagtgacttcttgttaataaagctgagagatgtgttacaaagacagatgaa
tttaaaactaattatttctagtgctgctctagatgcaaatctctttattaggtattttgg
aacttgcccagtaatacacattcaaggaagaccttttgaagttaaagaggtgtttttgga
ggacattttacgaagcactggttatacaaacaaagagatggtaaagtacaaaaaggagaa
gcagcgagaagaaaaacagcaaaacactcttactgagtggtgttctactcgagaaaataa
tagcaaactggaatctcagaagcaaagatctgtcccaagggcaacagaagagtataatct
gttggatggtggtggtgatgtggtatttaatcaactgactgaaaaagatgtgaatagcct
tgaaccatggctaataaaagaaatggattcttgcctttctgacatctggttgcataaaga
tattgattcctttgctcaggtgttccatctcattttaactgaaaatgtcagtgttgatta
taggcatagtgaaaccagtgcgactgcactaatgattgcttcaggcagaggctttttgag
tcaagtagaacaactgatcagtatgggagcaagtatccactgcaaatcatccaatggctg
gacagctttggactgggctaagcactttggacagacagaggtggttgacgtgttggagtc
gtacagtgcttcagtggaatttggaaatctagatgaaagttccctggtccaaaaaagtgg
tagtgaccttagtgcagaggacagagaactgttgaaagcttatcatcacagttttgatga
tgagaaagtggatctggacctgattatgcacgtactttataacatctgtcatagttgtga
tgctggagcgattttagtatttcttcctggatatgatgagatagttagcctgcgggaccg
tatcctttttgatgacaagagattcgctgataatgctcacagataccaagttttcatgct
tcattcaaatatgcagactttggatcagaagaaggtgcttaaaagtccaccttcaggagt
ccgcaaaataattctttctactaatattgcagaaaccagtgtaacagtcaatgatgttgt
atttgttattgactcaggcaagatgaaagagaagtcttttgatgcactgagctgtgttac
aatgctaaaaatggtgtggatttcaaaagccagtgctatccagagaaaaggcagggctgg
gcgctgtcagcctggagtctgttttcgtctcttcagcaggcttcgatttcagaatatgtt
ggaatttcagactccagaacttctaagaatgccacttcaggagctttgtttgcacacaaa
acttctggctccatttaattgtccaattgttgactttcttacaaaagctcctgatcctcc
accagctgtaattgtgagaaatgctgtgcaaatgcttaagacaatagatgccatggaccc
ttgggaagatcttactgaacttggctatcatctcactgaattaccagtagagccacacct
tggtaaaatggtggtgtgtgctgttgttctgaagtgcctggatcctattcttactattgc
ttgcactcttgcatatcgagacccttttgtcctacctacactggcatctcaaaagcgtgc
agccatgctgtgtagaaaacgttttactgcaggaacatttagtgaccatatggcacttct
cagggctttccaggcatggcagaaggcgcgcagtgatggctgggagagagccttttgtga
aaagaatttcctgtctcaagccacaatggaaatcatcgtcggaatgagaacacagttgct
tggccagctaagagcttcaggttttgttagagccagaggaggagctgatattagagatgt
taatactaactctgaaaactgggctgtagttaaagctgccttagtggctgggatgtatcc
caatctagtgcatgtagacagagaaaacctggttttgactggaccgaaggagaagaaagt
gcgatttcatcctacctctgttcttagtcaacctgagtataaaaagattcccccagcaaa
tgggcaagctgcagccattgaggcactccctacagactggcttatatacgatgaaatgat
gagagctcacaggatagcaaatatcaaatgctgttctgttgtaacacctgtcactgtgtc
actcttctgtggaccagctagattaccaagtaatgctttgcaggaaccttcgtcctttcc
aggggatggggtatctaatgataacagcgatagtgagatggaggacaaaacaactgctaa
tttggcactactgaagctagatgaatggctccatctcaaactggatcctgaagctgctgg
tttgctgtttcaactcagacagaagtggcatagcttgtttctgcgccgcatgcgagctcc
ttctaaaccatggtctcaagttgatgaaacaattgtaagagcagttacagctgttctaag
tagtgaagaacaggctgcaggtttgcagcagcctacaggaattggtcagagaccaagacc
tatgactgctgaagaacttcctacagcatctacatggaggtcaaccaccagtagaaagag
ctcggcagaaactgaattctctgatgactcctctaatgctgaaaaagttttgatgaaatc
tatgcgtccctcatttcaacagccaaagaagtacaaagaaaaaaacgtttttcattccaa
acgaacttcagatgacaggtcagatcaatcatcagggaagtctacagacagcagtagcta
tcctagcccctgtgctagtccttctccaatatctggaaagggttccaaatccccttcacc
aagacaaaatatgccagttcggtatattataatgaaaagcagcaacttgcaaaacattga
tatttctcaacagaagggtatatggtctactacgccaagtaatgaacgaaaactaaatag
agccttttgggagagcagcatggtttacttaatattttctgttcaagggtctggacactt
tcagggttttgctagaatggcttcagagatagggtgtgagaaaagtcaagactggggatc
ttctggttttggaggtgtatttaaggtggagtggatccgaaaagaaagcattccttttca
gtttgcacatcatttgctcaacccttggaatgacaataagaaagtacaaataagcagaga
tggccaggagctggaaccacaagttggagagcagttgctacagctttgggaccgtattcc
tttggctggaaaaaacgcaagtgattga
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integrated database retrieval system
