Phalacrocorax carbo (great cormorant): 104047815
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Entry
104047815 CDS
T08596
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104047815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104047815
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104047815
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
104047815
NCBI-ProteinID:
XP_009506463
LinkDB
All DBs
Position
Unknown
AA seq
569 aa
AA seq
DB search
MLWYNFGFLIIRILLSWLVQVNPGLAGDPEGVRASRKTYDTTGKQEDGPISGHAESSHPL
QDAPQENRPVSNEDREMSQHALPSGEDDEDDSDSDSDDDDVKVTIGNIKTGAPSYMGTPM
NLNLKTGRGYGASASAKLQPKGIDLDAAGNINGLPVIEVDLDSFEDKPWRKPGADLSDYF
NYGFNEETWKAYCEKQRRLQLGLDPAPPISTENKITVQQGRTGNAEKEVENNIIKTEFKT
DFLALVGGRMKAGPPPNRKLGGTIDVIGGQAGTIRRVEGRRRDKHASEENPIQVLGDHGS
KPQPPQQPQQPSQPQQPPQQQPFAPPAGPPPPPLAGPPPPHFLHPPPPVTSVPPPLHPPG
LPPPGPIPGLFPPPLAPPPALLIPTLDGQPASYNNRQPPPFGYNSADSGFISYPPISTSH
TPWVTTVDKGTSSSSSSHWEYSGSRRERERERERERERERGRDRTPTTSEYNNDDERYRY
YSRERSYDFERDYRRSRDRSREREDRHRERRHRDKEESSKHKSSRRKQHESEEGESHRRH
KHKKNKRSKEEKEASEDGAQEGEEQDAKE
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgctttggtacaatttcggcttcctaatcatccggatcttactaagctggctggtgcag
gtgaaccccgggctggcaggggaccccgagggggtgcgtgcctctaggaaaacatatgac
accactggtaagcaagaagatggaccaatttctggacatgcagagtcttcgcatcctttg
caagatgctcctcaggagaaccggcctgtcagcaatgaagaccgagagatgtcgcaacac
gcccttccaagtggtgaagatgatgaagatgacagtgacagcgacagtgatgatgatgac
gtgaaagttactattggcaacattaaaacgggagcaccttcgtacatgggaactcctatg
aatctaaacttaaaaacgggtagaggctatggagcatctgcttcagccaagttgcagccc
aaaggtattgacttagatgccgcagggaatataaatggattgcctgttatagaagtggat
ttagattcatttgaagacaaaccatggaggaaaccaggtgctgacctttctgattacttt
aattatggattcaatgaagaaacatggaaagcttattgtgaaaagcagcgacggcttcag
cttgggctggatcctgctcctcccatcagcactgaaaacaagatcacggttcagcaagga
agaacaggaaatgctgaaaaagaagtggaaaacaacatcatcaaaacagaattcaaaaca
gacttcttggctctggtgggaggacgcatgaaggctgggcctcctccaaataggaagctg
ggtgggacaatcgatgtgatcggtggccaggcaggcacgattaggagagtagaaggaaga
cgtcgtgataagcacgcctctgaagaaaacccaattcaggtccttggagaccacggaagt
aagccacaacccccccagcagccccagcagccgtcacagccccaacagccacctcagcag
cagccatttgcaccaccagcaggcccaccgcctcccccgctcgctgggccacctccacca
cacttcctccaccctcctccaccagttacttctgttccacctcccctgcatcctccaggt
ctgccaccacccggtcccatcccagggttgttcccgcctcctctggcacctccaccagct
ctcctcattccaaccttggatggccagccagccagctacaataatcggcagcctcctccg
tttggctacaactctgcagattcaggtttcatcagctacccacccatctccacatcccac
acgccctgggtgacgacggtggacaaaggcacaagcagctccagcagcagccattgggag
tactcgggctcgaggcgcgagagggagcgggagcgcgagcgggagcgcgagcgggagcgc
ggcagagaccgcacgccgaccactagcgaatacaacaacgatgatgaacgataccgctac
tacagccgggagcgcagctatgactttgagcgcgactaccgccggagtcgagatcgcagc
agggagcgagaggatcgtcaccgagagcgcaggcacagagacaaagaggagagcagcaag
cataagtcttcgagacgcaagcaacacgagagcgaggagggggagagccatcggcgtcac
aagcacaaaaagaacaagcgtagcaaagaggagaaggaggcgagcgaagatggtgcccag
gagggagaggagcaggatgccaaggagtaa
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