Phalacrocorax carbo (great cormorant): 104048190
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Entry
104048190 CDS
T08596
Symbol
DHX8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104048190 (DHX8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcao03041
]
104048190 (DHX8)
Enzymes [BR:
pcao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104048190 (DHX8)
Spliceosome [BR:
pcao03041
]
Complex C
Other components
Step II factors
104048190 (DHX8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
PRP38_assoc
Flavi_DEAD
AAA_16
T2SSE
PhoH
TsaE
ABC_tran
Sigma54_activ_2
OB_RRP5_4th
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104048190
NCBI-ProteinID:
XP_009506914
LinkDB
All DBs
Position
Unknown
AA seq
1113 aa
AA seq
DB search
MRPPPKPSTSKETAVKPKSEKEKLKELFPALCRPDNPNIRNMLDEDDVKVAADALKELEA
LMPSADRQGRQRNSDHRAKKKRKSRSRSRDRRRRHRSRSRSRSRTRDKNRGKSRYRSRSR
SQSPSRDRKDREKYVEKSSERWRDKHIDRPPPEEPSIGDIYNGKVTSIMQFGCFVQLEGL
RKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGSKTSLSMKDVDQDTGEDLN
PNRRRNLVGETNEETSMRNPDRPSHLSLVNAPEVEDDSLERKRLTRISDPEKWEIKQMIA
ANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPIKIVKN
PDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMGLNTHWVDPLPDVDGRQIAANMRG
IGMMPNDIPEWKKHAFGGNKASYGKKTQLSIIEQRESLPIFRLKEQLIQAVHDNQILIVI
GETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIR
FEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQK
RQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQI
HLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDP
APPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQR
AGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMD
APPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLT
IVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFI
QARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTL
IDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPT
KLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgcggcctccaccaaagccatctacaagcaaagagacagctgtcaaacccaaatcagag
aaggaaaagttgaaggaattgtttccagccctttgcaggccagacaatcccaacatcagg
aatatgctggatgaagatgatgtgaaagtggcagctgatgcacttaaagaacttgaagct
ctaatgcctagcgcagacaggcagggcaggcaacggaacagtgaccaccgggcaaagaaa
aagaggaagagccgaagccgtagcagggacaggagacgaaggcacagatctcgctccagg
tctcgttctaggactcgggataagaacaggggaaaatccagataccggtcaaggagcaga
agtcagagtcccagtagggaccgtaaggatcgagagaagtacgttgagaagagcagcgag
aggtggagagacaagcacatagaccgtccaccacctgaggagccttccattggagacatt
tacaatggcaaagtcacaagtataatgcaatttggatgcttcgtgcagctggaaggacta
aggaagcgttgggagggcttggtccacatctcagagcttcgaagagaaggacgggttgcc
aacgttgccgatgttgtgagcaaaggacagagagtaaaagtcaaagtgttatcctttact
gggtccaaaaccagcctgagcatgaaggatgttgatcaagacactggggaagacttgaac
ccaaaccggaggagaaacctggttggagaaaccaatgaagaaacctctatgagaaaccca
gacagacccagtcatctgtccctcgtgaatgccccagaggtggaggacgatagccttgaa
cggaaacgcctcacccgaatttcagacccagagaaatgggaaataaaacagatgattgca
gctaatgtgctttccaaggaggagtttcctgactttgatgaggagactgggattcttcct
aaagttgatgatgaggaagatgaggaccttgagattgagctagttgaagaagagccaccg
ttccttcgaggtcacactaaacagagcatggatatgagtcccatcaaaatagtaaagaat
ccagatggttccttgtcccaggctgcaatgatgcagagtgcattagctaaagaaaggcga
gaacttaaacaagcccagagagaagcagagatggattctatccccatgggactcaacaca
cactgggtggatcctctccctgacgtggatggaagacaaatagctgcaaacatgcgaggt
attgggatgatgcccaatgatatcccagagtggaagaagcatgcgtttggtggcaacaaa
gcttcttacggtaagaagacccagctttccatcattgagcagagagagagcctcccaatc
ttcagactgaaggagcagctgatacaagctgtgcatgacaaccagattctgattgttatt
ggagagacgggatctgggaaaacaacacagattacccaatacctggctgaggcggggtat
acgtcaagaggaaagattggatgtactcagcctcgcagagtggctgcaatgtctgttgca
aagagggtgtcagaggaatttggttgctgcttgggacaagaggttggctacaccattcga
tttgaagactgcactagccctgaaactgttatcaaatatatgacagatggtatgttactg
agggagtgcttgatagatcctgatctgactcagtatgccattattatgctggatgaagcc
catgagaggaccatacatacagatgtgctctttggactcctgaagaagacggtgcaaaag
cggcaggatatgaagttgatagtgacgtcagcaacgctggatgctgtgaaattctctcag
tatttctatgaagcaccaatcttcaccattcctggcagaacatacccagtagaaattctg
tacacaaaagagccagagacggactatttggatgccagtctgattacagtaatgcagatc
cacttaacagagccaccaggtgacattttggtgtttctgactggtcaggaagagattgac
actgcttgtgaaatcctctacgagaggatgaaatctctaggacccgatgttccagagtta
attatcctgccagtatattctgctttacccagtgaaatgcaaaccaggatctttgaccca
gccccaccagggagcagaaaggttgtcattgccactaacattgctgagacatctttgaca
attgatggaatatattacgtagtcgatcctggctttgtgaagcagaaagtttacaactcc
aagactggaattgaccagctggttgttaccccaatttcacaggctcaagcaaagcaacga
gcaggaagagctgggagaacaggaccaggaaaatgctataggttatatacagagcgtgct
tatcgagatgaaatgctaaccaccaatgtgcctgaaatccagagaacaaatctggccagc
acagtgctttccctgaaggctatgggcatcaatgatttgctctcctttgactttatggat
gctcccccaatggaaacgctcataactgccatggagcagctgtacaccctgggagctctg
gatgatgagggactgctcactcgacttgggcgcaggatggcagaattccccttggagcct
atgttgtgtaagatgttgatcatgtctgtacatctgggatgcagtgaggaaatgttgaca
atagtctccatgctgtctgtacagaatgtgttctacaggccaaaggataaacaggcactt
gctgatcaaaagaaagccaagttccatcagacagaaggtgaccacctcaccctgctggct
gtgtacaattcctggaagaataataagttttcaaatccctggtgctatgaaaactttatc
caggcccggtccttacgcagggcacaggacatccgcaagcagatgttgggcattatggac
aggcacaagctggatgtagtatcctgtgggaaggcaacagttcgagtccagaaggccatc
tgtagtggcttcttccgaaatgcagcaaagaaggatccccaggaaggttatcggaccctc
attgatcaacaagtagtctatatccacccatccagtgctctcttcaacaggcagccagaa
tgggtggtgtatcatgagctggtgctgaccaccaaggaatatatgcgtgaagtgacgact
attgatcctcgctggctggtagaattcgcaccagctttcttcaaggtttctgacccaacc
aagctgagcaaacagaaaaagcagcagcggctagaacccctgtacaatcgctatgaggag
cccaatgcttggaggatatcccgtgcgttcaggcggcgatga
DBGET
integrated database retrieval system
