Phalacrocorax carbo (great cormorant): 104048300
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Entry
104048300 CDS
T08596
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcao03021
]
104048300 (CHD1)
03036 Chromosome and associated proteins [BR:
pcao03036
]
104048300 (CHD1)
Transcription machinery [BR:
pcao03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
104048300 (CHD1)
Chromosome and associated proteins [BR:
pcao03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
104048300 (CHD1)
SLIK complex
104048300 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
DEAD
Motif
Other DBs
NCBI-GeneID:
104048300
NCBI-ProteinID:
XP_009507045
UniProt:
A0A093TFX9
LinkDB
All DBs
Position
Unknown
AA seq
1809 aa
AA seq
DB search
MNGHSDEESVRNSTGESSRSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSESDSGSDSGS
QSESESDTSREKKQSQAKLAKVDGSEFWKSSPSIFAVQRSAVLKKQQQQQKAVSSDSGSE
EDSSSTEDSADDSSSETKKKKHRDEDWQMSGSGSVSGTGSDSESEEDREKSSCEESESDY
EPKNKVKSRKPPSRIKPKSGKKSAGPKKRQLDSSEDEEEEDDDDYDKRGSRRQATVNVSY
KEAEETKTDSDDLLEVCGEDVPQTEEDEFETIEKFMDSRVGRKGATGAATTIYAVEADGD
PNAGFEKSKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKRW
LKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECS
WEDGALIAKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELR
DYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTL
TSWQREIQTWASQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSF
LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP
EKFASWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ
KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQH
LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL
RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG
QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTILHTGSTPSSSTPFNK
EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVA
NFSNMDEDDIELEPERNSRNWEEIIPEVQRRRIEEEERQKELEEIYMLPRMRNCAKQISF
NGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFG
GPLERLDAVARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGQERAGGRLGKVKGPTF
RISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLL
IGIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEA
QRLAGAGNSKRRKTRTKKNKVIKAAKIKEEIKSDSSPQPSEKSDEDDDEDNKDEIISVKH
PHKKIKAEKENEEKPEPDIGIKKEAEEKRETKEKENKRDLKREKKEKEDKKELKEKDIKE
KRENKVKESTQKEKEVKEEKVNEIKSESKEKTKKITLLDTPVHITATSEPVPISEESEEL
DQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPE
QIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHNDQNISSNVNTHVIRNPDV
DRLKENTNHDDSSRDSYSSDRHSLQYHDHHKDRHQGDTYKKNDSRKRPYSAFSNGKDHRD
WDHYKQDSRYYSDSKHRKLDDYRSRDHRSNLEGSLKDSRAHSDHRSHSDHKIHSDQRSTS
EYSHHKSSRDYRYHSDWQMDHRASGSGPRSPLDQRSPYGSRSPLGHRSPFEHSSDHKSTP
EHTWSSRKT
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcacagtgatgaagaaagtgtaagaaacagtactggagagtcaagccgatca
gatgatgattctgggtcagcgtcgggttctggatctggttcaagctctggaagcagtagt
gacggaagcagcagccagtcaggcagcagtgaatctgactctggttcagactcaggcagt
cagtcagaatcagagtctgacacatctagagagaagaaacaaagtcaagctaaactggcg
aaagttgatggatctgagttttggaagtctagtccaagtatatttgctgtgcaaagatca
gcagtgctgaagaagcaacagcaacaacaaaaggcagtctcatcagacagtggttcagaa
gaggactcatcaagtactgaagattctgcagatgactcatccagtgaaaccaagaagaaa
aaacatagagatgaagactggcaaatgtcgggatcagggtcagtatcgggaactggttct
gattcggaatcagaagaagacagggagaaaagcagttgtgaagagagtgagtctgactat
gagccaaaaaacaaggtcaaaagccggaaacctccaagcagaattaagccaaaaagtggg
aaaaagagcgcaggaccgaaaaagaggcaacttgattcatcagaggacgaggaggaggaa
gatgatgatgattatgataaaagaggatctcgtcgccaggcaacagtcaatgttagttac
aaagaagctgaagaaaccaagacagattctgatgatttgctggaagtttgtggagaagat
gtcccacagactgaagaagatgaatttgaaactatagagaagttcatggatagtagagtt
ggccgaaaaggagccacaggtgctgcaaccaccatctatgccgttgaggcagatggtgac
ccaaatgctgggtttgagaagtcaaaggagccaggagaaatacagtatcttattaaatgg
aaaggttggtcacacatccataacacttgggaaactgaagaaacactgaagcaacaaaat
gttaaaggaatgaagaagctggacaactataagaaaaaggatcaggaaacaaaacgatgg
ctgaaaaatgcttctccagaagatgtggagtattacaactgccagcaggagcttacagat
gatctacataaacaatatcagatagtggaaagaataatcgctcattcaaatcagaaatca
gcggctggttatccagactactattgcaaatggcagggactgccttattcagaatgtagc
tgggaagatggtgctctcattgccaaaaagtttcaggcacgcattgatgagtacttcagc
agaaatcaatccaagaccactccctttaaggactgtaaggttctaaaacagaggccaagg
tttgttgcgctaaagaagcaaccatcttacattggaggacacgaaggcttagagttgaga
gattatcagttaaatggattgaattggcttgctcactcatggtgcaaagggaatagctgt
attcttgcggatgaaatgggtctgggtaaaacaatacaaacaatttcttttctgaactac
ctgtttcatgaacatcaattgtatgggcctttcttgctggtagtgccactttctaccttg
acatcttggcaaagagaaattcaaacttgggcttctcagatgaatgctgtggtttactta
ggagatataactagcagaaatatgattagaactcatgaatggatgcatccacagaccaaa
cggttaaaatttaacatacttctaacaacatatgagattttgctgaaggataagtcgttc
cttggtggtctgaattgggcgttcataggagttgacgaagctcatcgtttaaaaaatgac
gactctcttctatacaaaactttaatagactttaagtctaaccatcgtcttcttattact
ggaacgcctctgcaaaactccctcaaagagctgtggtctttgttgcacttcatcatgcca
gaaaagtttgcctcctgggaagattttgaagaggagcatggtaaagggagagagtatggt
tatgcaagtcttcacaaagaacttgaaccatttctgctgagaagagttaaaaaagatgta
gaaaagtctttacctgctaaagttgagcaaattctgaggatggaaatgagtgcattgcag
aagcaatattacaagtggattttaaccaggaattataaagccctcagtaaaggttcaaaa
ggcagtacctcaggctttttgaacatcatgatggaactcaagaagtgctgtaaccattgc
tacctcattaaaccaccagatgataatgaattctataataagcaggaggccttacagcat
ttaatacgtagcagcgggaaactaatccttcttgacaagctactgattcgtctgcgagaa
cgtggcaacagagttttgattttctcacagatggtgaggatgctggacatcctagcagaa
tatctcaagtaccgtcagtttccctttcagagacttgatggatcaataaaaggggaattg
aggaaacaagcactggatcattttaatgcagagggatcagaggacttctgctttttactg
tctaccagagctggaggattaggaatcaacttggcatctgctgacactgtagttatattt
gattctgactggaatccacagaatgatctgcaagcacaggctagagcacatagaatcgga
cagaagaagcaggttaatatttatcgactagtcacaaaaggatcagtagaagaagatatt
cttgaaagagccaagaaaaagatggtgttagatcatttagtgattcagagaatggacact
acagggaaaaccatactacatacaggctctactccttcaagctcaacaccttttaataag
gaggagttatcagcaattttgaagtttggtgctgaggaactttttaaagaacctgaaggg
gaagaacaggagccccaggaaatggatatagatgaaatcttgaagcgggctgaaactcga
gaaaatgagccaggtccattaactgtaggggatgagttgctttcacagttcaaggtggcc
aacttttccaacatggatgaagatgatattgagttggaaccagaaagaaattcaagaaat
tgggaagaaatcattccagaagtgcaacggcgaagaatagaagaggaggagagacaaaaa
gaacttgaagaaatatacatgcttccaaggatgagaaactgtgcaaaacagatcagcttt
aatggaagtgaaggcaggcgcagtaggagcagaagatactctggatctgatagtgactcc
atctcagaaagaaaacggccaaaaaaacgtggaagaccacgaactattcctcgagaaaat
attaaaggatttagtgatgcagagatcaggcggtttatcaagagttacaagaaatttggt
ggccctcttgaaagattagatgctgtagctagagatgctgagctagttgataaatcagag
acagatcttagacgtttgggagagcttgtacataacggatgcattaaagctttaaaggac
aattcatctggacaagaaagagcaggaggtagacttgggaaagttaaaggcccaacattc
cgaatctcaggcgtgcaggtgaatgcaaagctagtcatctctcatgaagaagagttggca
ccattgcacaaatccattccttcagatccagaagaaagaaaaagatatgtcatcccatgt
cacaccaaggctgctcattttgatatagattggggtaaggaagatgattccaatctgtta
ataggcatctatgaatatggatatggcagctgggaaatgataaaaatggatcctgatctt
agtttgacacagaagattttgcctgatgatccagataagaaaccccaggcaaagcagtta
cagacccgtgcagactacctcattaaattactgaataaagaccttgcaaggaaggaagca
caaaggcttgctggtgcaggcaattcaaagaggaggaaaacaagaactaagaagaacaag
gtgataaaggctgcaaaaataaaagaagaaataaaaagtgattcttcaccacaaccctca
gaaaaatctgatgaagacgatgatgaggataacaaggatgagattatttcagtgaaacat
ccacataaaaaaattaaagcagagaaggaaaatgaagaaaagcctgagccagatattggt
ataaagaaggaagctgaagaaaaaagagagacaaaagaaaaggaaaataagagggatttg
aaaagggagaaaaaagaaaaagaggataagaaagaattaaaagaaaaagatattaaagaa
aagagagaaaacaaagtaaaagaatccacacagaaagaaaaagaagtgaaggaagagaag
gtaaatgaaatcaaatctgaaagtaaagaaaaaactaaaaaaattacattgttggatact
ccagttcatattactgcaactagtgaaccagttcctatatccgaagaatctgaagaactg
gatcagaaaacttttagtgtgtgcaaagaaagaatgaggcctgtcaaagcagcactgaaa
cagctggatcgaccagagaagggcctttctgaaagagagcagctggaacatactagacag
tgtctaatcaaaattggggatcacattactgaatgtctaaaggagtacacaaatcctgaa
caaattaaacaatggagaaaaaatttgtggatttttgtctctaagtttacagaatttgat
gccaggaagctgcacaaactgtataaacatgcaatcaaaaaacgccaagagtctcagcaa
cacaatgaccagaatattagcagcaatgtgaatacacatgtaattagaaatccagatgtg
gacagactaaaggagaatacaaaccatgatgacagtagcagggacagttattcttctgat
agacattctttacaataccacgatcatcataaagacaggcatcagggagatacttacaag
aagaatgactctaggaaaaggccctattcagccttcagcaatggaaaagatcacagagac
tgggatcactacaaacaagacagcagatactacagtgacagtaaacatagaaagttagat
gactacaggagcagagaccacaggtcaaacctagaaggaagtttaaaagacagccgggct
cattcagatcaccgttcccattcagaccacaagatacattcagatcagcgttccacttca
gagtacagccatcataaatcttctagagattataggtaccactcagactggcaaatggac
cacagagcttcaggtagtggcccacggtcaccattagatcagaggtctccttatggttca
agatctcccctaggacacagatctccatttgaacactcatcagatcacaaaagtacacct
gaacatacatggagtagccggaagacataa
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integrated database retrieval system
