KEGG   Phalacrocorax carbo (great cormorant): 104048531
Entry
104048531         CDS       T08596                                 
Symbol
VIM
Name
(RefSeq) vimentin
  KO
K07606  vimentin
Organism
pcao  Phalacrocorax carbo (great cormorant)
Pathway
pcao04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pcao00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    104048531 (VIM)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcao03019]
    104048531 (VIM)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:pcao04812]
    104048531 (VIM)
   04147 Exosome [BR:pcao04147]
    104048531 (VIM)
Messenger RNA biogenesis [BR:pcao03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     104048531 (VIM)
Cytoskeleton proteins [BR:pcao04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type III
     104048531 (VIM)
Exosome [BR:pcao04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   104048531 (VIM)
  Exosomal proteins of other cancer cells
   104048531 (VIM)
SSDB
Motif
Pfam: Filament DUF1664 TolA_bind_tri Phage_GP20 DUF7491 DUF4200 DUF4515 DUF1759 BLOC1_2 LAMB4 2_5_RNA_ligase2 RBD-FIP TPR_MLP1_2 T2SSF CENP-F_leu_zip
Other DBs
NCBI-GeneID: 104048531
NCBI-ProteinID: XP_009507316
LinkDB
Position
Unknown
AA seq 292 aa
GPPLPPHRCLAPSRLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFL
KKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSK
FADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEENFAVE
AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMP
IPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
NT seq 879 nt   +upstreamnt  +downstreamnt
gggcccccgctccctcctcaccgatgtctcgccccttccaggttgcaagaggagatgctt
cagcgggaggaggccgagaacaccctgcagtccttcagacaggatgttgacaatgcctct
ctggcacgtcttgatctggagcgcaaagttgagtccctgcaagaggagattgtcttcttg
aagaagcttcatgatgaggaaatccgagaattgcaggcccaactccaggaacagcacatc
caaattgatatggatgtttctaagcctgatcttactgctgccctgcgtgatgttcgccaa
cagtatgaaagcgttgctgctaagaatcttcaggaagctgaagagtggtacaagtccaaa
tttgcagatctctctgaagctgctaataggaacaacgatgccctgcgccaggccaaacaa
gaagctaatgaataccgcagacagattcagtctctcacctgcgaagttgatgcccttaag
ggaagcaatgaatccctggagcgccagatgcgtgaaatggaggagaactttgctgttgaa
gctgctaactaccaagacactattggccgtctgcaggatgagattcaaaacatgaaggaa
gaaatggctcgccatctccgcgagtaccaggacctgctgaatgtaaagatggctcttgat
attgagattgccacctacagaaaactgctggagggtgaagagagcaggattaacatgccc
attccaacctttgcttctttgaatctgagagaaaccaacattgagtctcagccaatggtt
gacactcactcaaagaggacacttctaattaagactgttgaaactagagatggacaggtt
attaatgaaacttcccagcatcatgatgacttggagtaa

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