Phalacrocorax carbo (great cormorant): 104048629
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Entry
104048629 CDS
T08596
Symbol
LMO7
Name
(RefSeq) LOW QUALITY PROTEIN: LIM domain only protein 7
KO
K06084
F-box protein 20
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
104048629 (LMO7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pcao04121
]
104048629 (LMO7)
Ubiquitin system [BR:
pcao04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
104048629 (LMO7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4757
PDZ
PDZ_6
LIM
PDZ_2
Motif
Other DBs
NCBI-GeneID:
104048629
NCBI-ProteinID:
XP_009507447
LinkDB
All DBs
Position
Unknown
AA seq
1624 aa
AA seq
DB search
MHDSHKDDRSYRRISVIEPKPTADFNRFLPNKNKQAVYVPAPLRKKRTEKNEDNRRSWAS
PVFTESDGTFSSGRERNPVASCQNSRAECGLTNPASLQMIYEYDSGSDSEAERRLPDVVM
DDLAKRRFLVKKSPVSSAAPGHHFVLRNDSPKSCSRESYPAGPLAAMLEPLSNQRRQRQL
DTKEENKPRVNIPSELSGYFDEDEEEEIGIPNIEKDDLYFRKLSSSAANAVVAFDKFLPK
FWTPEEELLWKKIRKSSFKPWYKEIQGFSRKKSDSEDEEFGYKQSSAIVANQPRPSFDWN
SSCRRDQSYKPTADYVGSSLSQIAEGKILEASDQPSQFSLLQALQKYSDYLSSETKTKMD
PTSGPRLIKCRKNISFVPGCNQGDMENGYLYPDLENDDLFVRKTGAFHVNQVVLQDPRYF
KKFSEQEPSLEGEIILQPREGQPVIPDLEKDDMIFRKILSQKKEVPLXXXXXXXXXXXXX
XXWSLPEEIRSKFLCLLEKNTTPEERKSNGRVLSPSSRHKKDDMLTRKIESWKVGSNIQP
VNFIPGPCSEDDWKKWEAIREASKVRHKKRQMVERLFQKLSDDQGSKSLNDVSAEELQSL
RKIRYEELQRIKEQLQEQDLKWQEDLAKWKNRRKSFTSELQKKKEEREEIERRASEVSER
STKSLKEMQQEREDRDQDSYGQRKHERRWMYSLNDDVFSEEKEPSMQSAAKDYRLEEDTS
YSSKDSKSMCAAQLRKKNLPESSAAPEVSSPPKSLAEEQSSALLSTCYSVNAQTGSAQVS
ASLPRSYQKADTSRLTSVVTPRPFGVHSRGISSLPRSFTMDDTQKYNGEVENAKRTQTLF
TSSSFSQPDSAHSLSSAAFRSRGEEEEEEEEEKGGVQSTPPPSLALPVKSQDQDVGSSIL
KPEYCSPPGSLSLASSAENVSLPEPEDSKSLEQYSEMRISINQRPGHSRNFGFTTNWSSS
GAVVQTVEEGSPAALCQLHVGDEIIAINSTKVSRMDYSQWEEAINRALETGNLVMDVRRY
GKNDWGKDQPSLPHVRHKILNLTSMATNIIGTSENKWIDATSGENISNVSTISTKRHFSS
SLQKSDTEAKLINGMQGDLGSGEQRASEPISLKNFKRRSQFFEQGGPEPAMPDLPVPSIS
APSRRVWDQEEERKRQEKWQKEQDRLLQEKYKREQEKLREEWLRAKQEAEKESCKYFDEE
QTVLTLNTTSVPARAPSVSSWRASPEVTTPEEPEGDGGSKLAARSLGEEEERRRLQEERR
IQEEAALRFEKERELQELELERQRKEKEQQHAEEQRRQAEKQREVSVETPQYQRHYERYE
VSKTIEDRAGHPLIDRHFERYEVSTTIEEQPGQSFADRNKSKSTSELNEFNTIRNGTQSK
YSERSWNVGESQKKSQKEQNLSAAELERQQILQEMRKRTSLHTDSSWIRQRSSSIHKEPI
SLYSNSMRRGESLDNLDSSRTSSWRHHSWLNQSASSSSLSSSQDFSRPVSTSNRAYMCTP
SSSKPPSAANSARAPSMSQAVPRAQSPLSASQPGSQTRSRSVSGKKICSYCNNVLGKGAA
MIIESLGLCYHLHCFKCVACGCDLGGSRSGAEVRIRNNKLFCNDCYIRFKSTSSGGIDIL
TDLN
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atgcatgactcccataaagatgacaggtcttaccgtaggatttctgtgattgaaccgaaa
cctaccgctgacttcaatcgcttcttacccaacaaaaataagcaggcggtgtatgtgcca
gcacccttaaggaagaagaggacagagaagaatgaggacaacaggaggagctgggcaagc
cctgtcttcactgagtcagatggaacgttttcaagtggacgtgaaaggaatcccgtagct
tcctgccaaaatagcagagcagagtgtgggctcacaaatccagcttctctccagatgatc
tatgagtatgacagtggctctgattcagaagctgaaagaaggctgcccgacgtggttatg
gatgacttagcaaaacgtagatttctagtcaaaaagagccctgtaagctctgctgcacct
ggacatcatttcgtgttgcgcaatgactctcctaaatcttgctcacgagaaagttatcca
gctggtccactagctgcaatgcttgaaccactgagtaaccaaaggaggcagaggcagttg
gatactaaagaggaaaacaaaccaagagttaacattccttcagaattatctgggtatttt
gatgaggatgaggaagaagaaataggcatcccaaacattgaaaaagatgatctctatttt
cgcaagctaagttcttcagcggcaaatgcagtggttgcttttgacaaatttcttcctaag
ttttggactccagaagaagaattgctatggaaaaaaatcaggaaatcctctttcaaaccc
tggtataaagagattcaagggttcagtagaaagaaatcagattctgaggatgaggaattt
ggttacaaacaaagctctgccattgttgctaatcaaccaagaccaagttttgactggaac
agcagttgcagaagggaccagagctataagccaactgctgattatgtgggaagctcattg
tcacagattgcagaaggaaaaatcttggaggcttctgatcagcccagtcagttttcgtta
cttcaggccctgcaaaaatactctgactacttgtcttctgaaacaaagaccaaaatggat
cctacttctggccctaggctcataaaatgtagaaagaatatttcctttgtaccaggatgc
aaccaaggagacatggaaaatgggtatctgtatccagatttagaaaacgatgacttgttc
gttcggaaaactggggctttccatgtgaatcaagttgttctccaagacccccggtatttt
aaaaaattctctgagcaggagcctagcctagagggtgagataattctgcaacccagagag
ggccaacctgtgattccagatttggaaaaggatgacatgattttccgtaaaatcctctct
cagaaaaaagaggtgcctttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnncgtggagtcttccagaggagatccggtctaaattcctgtgtttacttgaaaaaaac
acaacaccggaggaaagaaagagcaacggcagagtgctctcaccgtcttcccgccataag
aaggacgatatgctgacccgcaagattgaatcttggaaggtgggaagcaacatccagcca
gtaaatttcatcccgggtccatgcagcgaagatgactggaagaagtgggaggcgatcagg
gaggccagcaaagttagacacaagaaacggcagatggtggagagactgtttcaaaagctt
tctgatgatcaagggagtaaatctttgaacgatgtcagcgcagaggagctgcagtcattg
cgcaaaatccgttacgaagagctacaaaggataaaagaacagttacaagaacaagatcta
aagtggcaagaagatctagcaaaatggaagaatcgtagaaagagcttcacttctgaattg
caaaagaaaaaggaagagagagaagaaatagaaaggagagcctctgaggtgtctgaaagg
agtaccaagtcactgaaagaaatgcagcaggagagggaggacagagatcaagactcctac
gggcagcgaaaacatgaacgcaggtggatgtattcactgaatgatgatgtgtttagtgaa
gaaaaagaaccttccatgcagtcagcagcaaaagattaccgtttggaagaagatacctcc
tacagcagtaaggacagcaaaagtatgtgtgctgcacaactgcgcaagaagaacctgcca
gagagctcggccgctcctgaagtttcctctccgccaaagagcctggcagaggagcagagc
tcagctcttttgtctacttgctactccgtgaatgctcaaactgggtcagctcaggtttca
gcttctctcccgagaagttaccagaaagctgatacctctaggttaacatctgtggttaca
ccaagaccttttggtgtgcactcaagaggaatctcgtcacttccacggtcgttcacgatg
gatgatacccagaaatacaacggagaagtagaaaacgctaaaaggactcaaactttgttc
actagcagttcgttttcacaaccagactcggcacactctctctcctccgctgcattcaga
agtagaggggaggaggaggaggaggaggaggaggaaaaaggaggtgttcagtcaacacca
cctcctagtttggcgctacctgtaaaatcccaagaccaagatgttggaagcagtattctt
aaaccagagtattgctccccacctggttctctttcacttgcatcttctgcggaaaatgtg
agtctgccagagcctgaggactcaaaatccctggaacagtacagtgaaatgagaatcagt
ataaaccagagacctggccacagtcgcaactttgggtttacaacaaattggagttcttca
ggggccgttgtacagacagttgaagaaggcagtcctgcagcactttgtcagctgcatgta
ggtgatgagatcattgctatcaacagcacaaaggtttcacgtatggactatagtcagtgg
gaagaagccatcaacagagcactagaaactggaaacctggtcatggatgtcagacgatat
ggaaagaacgattggggcaaagaccagccttccctgccacatgtaaggcacaaaatcctc
aatctcaccagtatggctaccaacattataggtacatctgaaaataaatggattgatgca
acttctggagaaaacatttcaaatgtttccaccatatcaacaaaaagacatttctccagc
agccttcaaaagtctgatacagaagcaaagttgataaatggaatgcaaggagatcttggc
tcaggcgaacaaagagcatctgaacctatttctttgaaaaactttaaaagacggtcacaa
ttttttgaacaaggaggcccagagcctgcaatgcctgatctcccagtcccatccattagt
gctcctagtcgtcgggtttgggatcaagaggaagaacgaaaacggcaggaaaagtggcaa
aaggagcaggaccgtttactgcaggagaaatacaaacgggaacaagaaaaactgagggaa
gaatggctacgagctaagcaagaagccgaaaaagagagctgcaagtattttgatgaggag
cagactgttctaaccttgaacacaacgtctgtccctgcacgggctccatctgtgtccagc
tggagagcaagccctgaagtgactactcctgaggaaccagaaggagatggaggaagcaag
ctggcagcacgctcgctgggtgaggaagaagagaggaggaggcttcaggaggaacggagg
atccaggaagaagcagccctgcgttttgagaaagaaagggaactccaagaactggagctt
gagaggcaacgtaaagagaaggagcagcaacatgcggaggagcagaggcggcaggctgaa
aagcagagggaggtgtcagtggagactcctcagtaccaaagacattatgagcgctacgaa
gtatctaaaacaatagaggatagagctggccatcctctcattgacagacattttgagcgt
tatgaagtttctacaaccattgaggagcaacctggtcagtcatttgctgacaggaataag
tccaagtcgacttcagaactgaatgaattcaacacaatcagaaatggcacccagagcaag
tattcggagaggtcctggaacgtgggtgagtcgcagaagaagtctcagaaggagcaaaac
ctgtccgcagcagagttagagagacagcaaatcctacaggaaatgagaaagagaacatct
ctacacacggatagcagctggattaggcagcggagttccagtatacataaggagcccatt
agtctgtacagcaatagtatgaggagaggagagtctttggacaatcttgattcctcaaga
acgagctcatggaggcaccactcatggctgaatcaatctgcatcctcttcatctctgtcc
tctagtcaagatttcagtcgcccagtgtccacttcaaaccgagcctatatgtgcactcct
tcctccagcaaaccaccttctgcggccaactctgcaagagccccatccatgtcccaagca
gtcccccgggctcagtctcccctctctgcttctcagccagggtcccagacacgcagcagg
tcagtcagtgggaagaaaatctgttcatactgtaataacgttctgggcaaaggagcagcc
atgatcattgagtctcttggtctttgttatcatttacattgctttaagtgtgttgcctgt
ggatgtgaccttgggggatcccgctctggagctgaagttaggatccgaaacaacaaactc
ttctgcaacgactgctatatcagatttaaaagtacaagttcaggaggaattgatatactt
acagatcttaattaa
DBGET
integrated database retrieval system
