Phalacrocorax carbo (great cormorant): 104048948
Help
Entry
104048948 CDS
T08596
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03030
DNA replication
pcao03420
Nucleotide excision repair
pcao03430
Mismatch repair
pcao03440
Homologous recombination
pcao03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104048948 (RPA1)
03420 Nucleotide excision repair
104048948 (RPA1)
03430 Mismatch repair
104048948 (RPA1)
03440 Homologous recombination
104048948 (RPA1)
03460 Fanconi anemia pathway
104048948 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcao03000
]
104048948 (RPA1)
03032 DNA replication proteins [BR:
pcao03032
]
104048948 (RPA1)
03400 DNA repair and recombination proteins [BR:
pcao03400
]
104048948 (RPA1)
Transcription factors [BR:
pcao03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104048948 (RPA1)
DNA replication proteins [BR:
pcao03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104048948 (RPA1)
DNA repair and recombination proteins [BR:
pcao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104048948 (RPA1)
MMR (mismatch excision repair)
104048948 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
104048948 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
IBR
Motif
Other DBs
NCBI-GeneID:
104048948
NCBI-ProteinID:
XP_009507829
LinkDB
All DBs
Position
Unknown
AA seq
601 aa
AA seq
DB search
MQGENISKPVLQVINTRAIATGNGPPRYRVLMSDGVNTLSSFMLATQLNSLVEDERLSAQ
CICQVNRFIVNSLKDGRRVVILMDLDVLKTADKVGGTIGNPVPFNEGQAQQRSSAPAANP
APSKPQQQNGNMSVAGPAAPKYLAPSIQFGKGSAPSSAKTPGPLQAKVVPIASLNPYQLK
WTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQADKFFPLIELNKVYY
FTKGSLKNANKQYTAVKNDYEITFTNETTVVPCDDAQHLPSVQFEFVSISDLENTPKDSI
VDVIGICKSYEDVTKITVKANNREVSKRNVHLVDTSGKLVTATLWGNEAEQFDGSRQPVV
AIKGARVSDFGGRSLSVLSSSTVVINPDSPEAFKLRGWFDSEGQLLECASISDVRGGPVS
GANTNWKTLFEAKSENLGQGDKADYFSCVGTVVHLRKENCMYQACPSQDCNKKVIDQQNG
LYRCEKCDREFPNFKYRMMLLVTIADCLEYQWVTCFQESAEFILGQNAAFLGELKEKNEQ
AFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAVDVKAVNYREYCKRLIANIRRNAQL
G
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggggagaacatctccaagcccgtgttgcaagtcatcaatacacgggctattgcc
acaggaaacgggccaccgcgttaccgagtgttgatgagtgatggggtcaacacactctcc
tcattcatgttggcaacgcagctgaactctctggtggaagatgaacgcttatcagcccaa
tgtatttgccaggtcaacagattcattgtcaacagcctgaaagatggaaggagagtggtt
atactgatggatttagatgttctgaaaactgctgataaggttggcgggactattggcaat
ccagtgccattcaatgaagggcaagcgcagcaacgttcttcagctccagcagcaaaccca
gcacccagcaaaccccagcaacaaaatggcaatatgtctgtagcaggtcctgctgctccg
aagtaccttgctccctccatccagtttggtaaagggagcgctcccagctcggcgaagaca
ccggggccgctgcaggccaaagtagtgccgattgccagcttgaacccgtaccagctgaag
tggaccatttgtgctcgtgttacccaaaaaggccagatccgcacatggagcaactcccgt
ggcgaaggaaagctcttttccatagagctggttgatgaaagcggcgagattagagctact
gcattcaatgatcaagcagacaagttctttcccctcattgaactgaacaaggtatattat
tttaccaaaggcagtctgaagaatgctaacaagcaatatacggctgttaagaatgactat
gagattacattcactaatgagactacagttgtgccctgtgacgatgcccagcatctccca
tctgttcagtttgagtttgtatccatctctgacttggagaacacacccaaagactcgatc
gttgatgtaattggaatttgtaagagctatgaagatgtcactaaaattacagtgaaagct
aacaatagggaggtatcgaagaggaacgtgcatctggtggatacatcagggaaactggtg
acagctacgctgtggggaaacgaggctgaacagtttgatggttctagacaacctgtggta
gccatcaaaggagcccgagtctctgattttggtggtagaagcctgtctgtcctgtcctcg
agtacagttgtcatcaaccctgatagcccagaggcttttaagctccgaggatggtttgac
tccgaggggcagcttctggaatgtgcctcgatctctgacgtgaggggtgggccagtgtct
ggggcaaataccaattggaagactttgtttgaagccaaatctgagaacttgggacaagga
gataaggcggattattttagctgtgtgggcacagtcgtacatctgcgcaaagagaactgt
atgtaccaggcatgtccctctcaggattgcaataagaaagtgatagaccaacaaaatgga
ctgtatcgttgtgaaaagtgtgatcgtgaattccccaacttcaagtaccgcatgatgctt
ctggtgaccattgcagactgtctggagtatcagtgggtgacttgttttcaagagtcggca
gaattcattcttgggcagaacgcagctttcctgggagaactgaaggaaaagaacgagcag
gcgtttgaagaagtgttccaaaatgcaaacttcaacacgtatgagttcaggatccgagta
aaactggagacttacaatgatgaatctcgtattaaggctacagcagtggacgtcaaagct
gtgaactacagagaatactgcaagaggttgatcgcaaacatcaggagaaacgctcagcta
gggtga
DBGET
integrated database retrieval system
