Phalacrocorax carbo (great cormorant): 104050812
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Entry
104050812 CDS
T08596
Symbol
ZSWIM8
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger SWIM domain-containing protein 8
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
pcao
Phalacrocorax carbo (great cormorant)
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pcao04121
]
104050812 (ZSWIM8)
Ubiquitin system [BR:
pcao04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
104050812 (ZSWIM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ZSWIM4-8_C
Ku_PK_bind
Motif
Other DBs
NCBI-GeneID:
104050812
NCBI-ProteinID:
XP_009510041
LinkDB
All DBs
Position
Unknown
AA seq
1397 aa
AA seq
DB search
LRRRDLCSQLRQWQLKVIDNVKRGQHKKSLEKLFQGFKPAVEACYFNWEEAYPIPGITYS
STDKKNSFCWVKAIQQRSCRLQCAETACEAGRIHGQEPGGPCLQPGDRLRPSPQEPAVRP
KELTGKRKVVSETPQRVLRRLSAEGDKSGYKTAVGKAKLPVGKGLTSKHSGKRRMSSEDS
SLEPDLAEMSLDDSSLALGAEASNTFSFTESPLSRSYRDTFEEDGGVYFSEGPEPSVRSS
SMAKKSPKDPVGEMGSGDDDLPSADENSGGVSLKPEEVGENGAAGGGDDGEEEDDYQVYY
LNPQEVAKEDDDKAEGGNEEEQDIFAGIKPLEQENRMEILFACAEALYAHGYSNEACRLT
VELARDLLANPPDLKVEQPPTKGKKNKVSTSKQTWMATNTLSKAAXXXXXXXXXXXXYHN
LAFRIGMFALELQRPPASTKALEVKLAYQESEIVALLKKIPLGTNEMNTIRGRAEELREG
TLCDYRPVLPLMLASFIFDVLCTPVVSPTGSRPPSRNWNNEMPGDEELGFEAAVAALGMK
TTVSEAEHPLLCEGTRREKGDLALALMITYKDDQSKLKKILDKLLDRESQTHKPQTLSSF
YSSSKPTVANQKSPSKHATQSTAAIQQLPGTSVTQQAAVSTAVQSSPENFVEKSAQESSQ
RSPCEPAVESTVLKQEGKVPSRLALGNRGGYNGRCWGSPVRQKKKHTGMASIDSSAPETT
SDSSPTLSRRPLRGGWATTSWGRGQDSDSISSSSSDSLGSSSSSGSRRASGGARAKTVEV
GRYKGRRLESHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTHPSSSGGHQGPH
RNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVECWDGHL
TPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNLMLEK
ACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQTVGGTPAQREGATGCSASGTRAGSEAAR
GLTDNRVTSEPTTVTVAGRLLSTAARSHMPVISVGSTMYQQHTMAGPAMAHTHTQGLHPY
TTLQTHIPCNPQYIGHTIQHMPRPAVFPVPGSAYTQGVHPAFIGAQYPYSVTPPSLAATA
VSFPGVPVPSMTQIAVHPYHSEAGLSLSSNVAIGSVHAGSTFPAIQGASLTTLSSQPNSL
VTGGFPAEDEQHSQPVSPQGLHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTEDV
KWLLGLAAKLGVNYVHQFCVGAAKGVLSPFVLQEIIMDALQRLNPAHVHNHLRTPAFHQL
VQRCQQAYMQVTIHRLIHLTPADYDDFVNAIRSARSAFCLTPMGMMQFNDILQNLKRSKQ
TKELWQRVSLEMTTFSP
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
cttagacgcagggacctttgctcacagctcagacagtggcagctgaaggtcatagataat
gttaagagaggtcagcacaagaaatcactggagaagctcttccagggtttcaagccagct
gtggaagcctgttacttcaactgggaggaagcttatcccattcctggtattacatatagc
agcactgacaagaagaactcattctgttgggtaaaggccatccagcagaggagctgcagg
ctgcagtgtgcagaaactgcctgtgaggctggtagaatccatgggcaggagcccggggga
ccatgtctacagcctggggacaggctgcgtccctctccccaggagccagcggttcgtccg
aaggaacttactggaaagcggaaggttgtctctgaaacaccgcagagggttctgagacga
ctttcagcagaaggtgataaatctgggtataagactgcagtgggcaaagcaaagttgcca
gtgggcaaaggcttgaccagtaaacatagtgggaaacgccgcatgagcagtgaagacagc
tctctggagccagacctggcagagatgagcctggatgacagcagcttggctctaggggca
gaagccagtaacacatttagttttacagaaagcccactgagcaggagctacagggacacc
tttgaggaggatggtggggtgtacttctctgagggacctgagcccagtgtcaggagcagt
tccatggccaagaaatcgcccaaggatcctgtgggggaaatgggtagtggtgatgacgac
ctgccctctgcagatgagaacagtggtggtgtgagcctgaagccagaagaagtgggagag
aatggtgcagcagggggaggggatgatggagaagaggaagatgattaccaggtatactat
ctgaatccacaagaggtagccaaggaagatgatgacaaagctgaagggggaaatgaagag
gagcaggatatatttgctggtataaaacctctggagcaagagaaccggatggagatcctg
tttgcctgtgcagaggccctgtatgcacatggatacagtaatgaagcatgccgcttaact
gtagagcttgccagggacctactggccaaccctccagatctcaaagtggaacagccacca
actaagggcaaaaagaacaaggtatcaaccagcaagcagacttggatggcaaccaacacc
ttgtctaaagctgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtaccacaac
ctggccttccgaataggaatgtttgctctggagctgcagagaccacctgcctctacaaag
gctctggaggtgaagctggcttatcaggagtctgagattgtagccctcttgaagaaaatt
cccttgggcactaatgagatgaacactattcgaggaagagctgaagaactgcgagaaggg
acattgtgtgattaccgtcctgtcctgcctctgatgttggctagctttatatttgatgtc
ctgtgcactccagtggtttctcctacaggctctagacccccaagccgtaattggaataat
gaaatgcctggagacgaagagcttggttttgaggcagctgttgctgctcttggcatgaaa
acaactgtcagtgaagcagaacatcctctgttgtgtgaaggcacccgaagggagaaaggg
gatctggcactagccctgatgattacttacaaggatgatcaatctaagctgaagaaaatt
ttagacaaactcctagacagagagagtcaaactcacaaaccacagactctgagttccttc
tactcatccagcaagcctacagtagcaaatcaaaaatctccttccaaacacgccacccag
tccactgcagcgatccagcagcttccagggacttctgtcactcagcaagctgctgtaagc
actgcagtccagagcagcccagagaacttcgtggagaagagtgcacaggagagctctcag
aggtccccctgcgagccagctgtggagtccactgtcttgaagcaagagggaaaggtcccc
agtcgtctggcccttggaaaccgaggtggatacaatgggagatgctggggttcacctgtc
aggcagaagaagaaacacacaggcatggctagtattgacagcagcgctcctgaaaccacc
tctgacagttctccaacgctcagtcggcgtccgctacgtgggggatgggcaacaacatcc
tggggcagaggacaggacagtgacagcatcagcagttcttcaagtgattctctgggatct
tcctcttccagtggcagtaggagagccagtgggggagcccgtgcaaagactgtggaagtt
ggcaggtataaggggagacggctggagagccatgctcctcatgtcccaaaccagccctca
gaagcagctgctcacttctactttgaattggccaagacagtccttatcaaagcaggtgga
aacagcagtacctccatattcacccacccttcctccagtggtgggcaccagggaccacac
cgcaaccttcacctctgcgcctttgagattgggctgtacgcgctagggctgcacaacttt
gtgtctcccaactggctctctcgaacttactcctcccatgtctcttggatcacagggcag
gccatggagattggtagcgcagccttgaacatcttggtggagtgttgggatggacatctg
actcctccagaggtggcatcattggcagacagagcttcacgggccagagattccaacatg
gtgcgggcagctgctgaactggcactcagctgcctgccccatgctcatgccctgaaccca
aatgagatccagagggctctggtgcagtgtaaggaacaggataatctgatgctggaaaag
gcctgtatggcagtagaagaggcggccaaaggaggtggtgtgtacccagaagtcctcttt
gaagtagctcaccagtggtactggctttacgaacagactgttggtgggaccccagcccag
agagaaggtgccactggctgtagtgctagtggtacacgggctggctctgaagcagcacgt
gggttgacagacaaccgggtgacctctgagccaaccactgtaacagtggcaggccgactc
ctgagcaccgcagcgagaagccacatgccagtgatctctgtggggtcgaccatgtaccag
cagcatacaatggcagggccggccatggcacatacacacacgcagggcctccacccttac
actacccttcagactcacatcccctgtaatccccagtatattggacacactatccagcac
atgccgcgcccagctgtctttccggtgcctggctcagcgtacacacagggtgtccatcca
gcattcataggagcgcagtacccctattcagtaacaccaccatcattggcagctacagca
gtgtcattccctggtgtgccagtcccatccatgacgcagattgcggtgcatccctatcac
agtgaggcaggactgtcactgtcttccaatgtagcgataggaagtgtccatgcaggatca
acgttcccagcgattcagggggcttccttgacaactctgtcctcacagcccaactccctt
gttacagggggttttcctgccgaggatgagcagcacagtcagcctgtgagcccccagggt
ctgcactacctccactccgcataccgagttgggatgctggctctggagatgcttggccga
agagctcacaacgaccatcccaacaacttctcccgcagcccaccctacacggaggatgta
aaatggctccttgggttagctgcaaagttaggtgtaaactacgtgcatcagttttgcgtt
ggtgcagccaagggggtgctgagccctttcgtgcttcaggagatcatcatggacgctcta
cagaggctcaaccctgcccacgtgcacaaccatctgcgcaccccagccttccaccagctg
gtgcagagatgccagcaggcctacatgcaggtaactattcatcggctgatccatctcact
ccagctgactacgatgacttcgtgaatgccatccgcagcgccagaagcgccttctgcctg
acccccatgggcatgatgcagtttaatgatattctccagaacctaaagcgcagcaagcag
acaaaggagctgtggcaaagggtctctctggaaatgaccaccttctcgccgtga
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