Phalacrocorax carbo (great cormorant): 104051218
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Entry
104051218 CDS
T08596
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104051218 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104051218 (SKIV2L2)
03041 Spliceosome [BR:
pcao03041
]
104051218 (SKIV2L2)
03009 Ribosome biogenesis [BR:
pcao03009
]
104051218 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
pcao03016
]
104051218 (SKIV2L2)
Enzymes [BR:
pcao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104051218 (SKIV2L2)
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104051218 (SKIV2L2)
Spliceosome [BR:
pcao03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104051218 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
104051218 (SKIV2L2)
Ribosome biogenesis [BR:
pcao03009
]
Eukaryotic type
Pre-60S particles
Helicases
104051218 (SKIV2L2)
Transfer RNA biogenesis [BR:
pcao03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104051218 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
104051218
NCBI-ProteinID:
XP_009510524
UniProt:
A0A093TLA1
LinkDB
All DBs
Position
Unknown
AA seq
995 aa
AA seq
DB search
RRSEEKSSVAPTGKPKREVEADSNEDALLGKKPKLEDVVSEDANLADLMPQVKVQAVETV
EGCTHEVALPADEVFTGLKPRTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGK
TVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVM
TTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIP
NARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAM
QVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMT
KLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETI
EILFSEGLIKALFATETFAMGINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRR
GMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEK
SFYQFQHYRTIPEIVERVNNLEGQYNKIAIPNEENVVIYYKIRQQLAKLGKEIEEYVHKP
KYCLPFLQPGRLVKVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESL
KNSATEAAKPARPDEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQ
KRFPDGVPLLDPIDDMGIKDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQ
IAMDIKAAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELL
LTEMMFNGLFNELSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSA
EAKLEIDEENYLNSFRPNLMDVVHTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQM
CQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL
NT seq
2989 nt
NT seq
+upstream
nt +downstream
nt
aagacgatcggaggaaaaatcttcagtggctccaacagggaagcccaaaagggaagttga
ggctgatagtaatgaagacgctcttttgggaaagaagccaaaattggaagatgttgtatc
agaagatgctaatctggcagacctgatgcctcaagtaaaggtgcaagctgtggaaactgt
tgaaggctgtacacatgaggttgcacttccagcagatgaagtcttcacaggtctgaagcc
aagaactggaaaagctgcaaaagaatatccatttattcttgatgccttccagagagaagc
tattctttgtgtagataataaccagtctgtgttagtgtcagctcatacatcagctggtaa
aactgtttgtgctgagtatgcaattgccctggctttgagggagaaacagcgtgtgatatt
tacgagtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttca
ggatgttggtttgatgactggggatgtcaccattaatcctacagcttcttgtctggtaat
gacaaccgagattttgagaagtatgctctacagaggttctgaggttatgcgagaagttgc
atgggttatttttgatgaaatccactacatgagggattcagaacgtggtgtggtttggga
agaaacgattattttgctccctgacaatgttcattatgtgttcctttctgcaactattcc
aaatgcccgtcagtttgctgaatggatctgccatcttcacaaacaaccttgccatgtgat
ttacactgactaccgacccactccactgcagcattatatattcccagcaggaggagatgg
actccacttggttgttgatgaaaatggagatttcagagaagataattttaatacagcaat
gcaggtgcttcgagatgcgggagacttagcaaaaggggaccagaagggcaggaaaggagg
aacgaaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttcca
acctgtgattattttcagcttcagtaagaaagactgtgaagcctatgctcttcagatgac
aaagttagatttcaatacagatgaagaaaaaaaaatggttgaagaagtattcaataatgc
gattgattgtctgtcagatgaagacaaaaagcttcctcaggttgagcatgtacttcctct
tctgaagcgaggaattggtatccatcatggtggtctgcttcctatcttaaaagaaaccat
agaaattcttttctctgagggcctaataaaggctttatttgcaaccgagacttttgctat
gggaattaatatgccagccaggactgtgctatttacaagcgccagcaaatttgatgggaa
agatttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccg
aggtatggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaat
tggcaaacagcttttgaagggttccgctgatcctttaaacagtgcattccacctgacgta
caacatggtattgaacttgcttcgagtagaggaaattaaccctgaatacatgttagaaaa
atccttctatcagttccaacattacagaactattccagaaatcgtagaaagagtgaataa
tttggaaggacagtacaacaaaatagcaattcccaatgaagaaaatgtggtcatatacta
caagatcagacagcagcttgcaaaactcggtaaagagattgaagaatatgttcacaaacc
aaagtattgcttgccctttctacagccaggaagactggtaaaggtgaagaatgaaggtga
tgactttggatggggagtggttgttaatttctctaagaaatcgaatgttaagccaaattc
tggtgaattggacccattatatgtagttgaagtactactgcactgcagcaaagagagtct
gaaaaactctgctactgaggctgcaaagcctgccagacctgatgagaaaggggagatgca
ggttgttccggttttggtacatcttctctcagctatcagcagtgtccgactttacatacc
aaaagacctgaggcctattgacaacaggcaaagtgtgttaaaatctatacaagaagtaca
gaagcgatttcccgatggagtaccactactagatcctattgatgacatgggcatcaaaga
tcaaggactaaaaaaagtaatccaaaaagtagaggcatttgagcacaggatgtattcaca
tcctcttcacaatgatcccaacttggaaactgtatacaaactttgtgaaaaaaaagcaca
gattgctatggatattaaagcagcaaaacgagaactgaaaaaggccagaactgtcttaca
aatggatgaactcaaatgccgcaagcgtgttttgagaaggctggggtttgccacgtcttc
agatgttattgagatgaaaggacgggtcgcttgtgaaatcagcagtgctgatgaactgct
cctgacagaaatgatgttcaatggcctcttcaatgaattatctgcagaacaggcaactgc
actgctaagctgttttgtatttcaagagaattccagtgaaatgccaaaattgacagagca
gttggcaggaccacttcggcaaatgcaggagtgtgcaaaaaggattgccaaggtgtcagc
agaagcaaaactggaaattgatgaagaaaattacttaaattctttcagacccaacctaat
ggatgttgtgcatacatgggcaaatggagctaactttgctcacatctgcaaaatgactga
tgtctttgaaggtagcataattcgttgcatgagaaggctagaggagttgctgcggcaaat
gtgccaggctgcaaaagccattggaaacacagagctggaaaataagtttgcagaggggat
tacgaaaatcaagagggatattgtgtttgctgcaagcctttacctataa
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