Phalacrocorax carbo (great cormorant): 104052121
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Entry
104052121 CDS
T08596
Symbol
TNPO1
Name
(RefSeq) transportin-1
KO
K18752
transportin-1
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104052121 (TNPO1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104052121 (TNPO1)
03009 Ribosome biogenesis [BR:
pcao03009
]
104052121 (TNPO1)
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104052121 (TNPO1)
Ribosome biogenesis [BR:
pcao03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
104052121 (TNPO1)
Pre-60S particles
104052121 (TNPO1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_2
Arm
HEAT_EF3_N
TOR1L1_N
IBN_N
Vac14_Fab1_bd
Cnd1
Adaptin_N
PDS5
CEP104-like_TOG
MMS19_C
UNC45-central
Dopey_N
RTP1_C1
TPR_TTI1_C
DUF3689
HEAT_DAAF5
Motif
Other DBs
NCBI-GeneID:
104052121
NCBI-ProteinID:
XP_009511587
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
KLEQLNQYPDFNSYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFHNFPSEVTDFIKSEC
LNNIGDSSPLIRATVGILITTIASKGELQNWPELLPKLCSLLDSEDYNTCEGAFGALQKI
CEDSAEILDSDILDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDP
FIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMISIVEYMLERTQDQDENVALE
ACEFWLTLAEQPICKDVLCRHLTKLIPVLVNGMKYSEIDIILLKGDVEEDEAIPDSEQDI
RPRFHRSRTVAQQHEEDGIEDDDDDDDELDDDDTISDWNLRKCSAAALDVLANVFRDELL
PHILPLLKELLFHPEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVR
SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL
VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM
LKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLHNVHPDQHEA
PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILELMYQCMQDKMPEVRQSSFALLGDLT
KACFQHVKPCIAELMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLV
EIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFR
GICTMISVNPSGVVQDFIFFCDAVASWISPKDDLRDMFCKILHGFKNQVGDENWRRFSDQ
FPLPLKERLAAYYGV
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
aaactagagcaacttaatcagtatccagacttcaacagctacctgatttttgttcttacg
aagttaaaatctgaagatgaaccaacacgttccttgagtggtctcatattgaagaataat
gtaaaagcacattttcacaactttcccagtgaggtgactgacttcattaaaagtgaatgt
ctgaacaatatcggtgattcctcccccttaattagagctactgtaggcattcttataaca
accattgcctcaaaaggggaattacagaattggcctgagctcttaccaaagctttgcagc
ctgttggattctgaagattacaatacctgtgagggtgcatttggtgctcttcagaagata
tgtgaagattctgctgaaattttagatagtgatatattggatcgaccgctcaatatcatg
atacctaaattcttgcagttcttcaagcacagcagcccaaaaataaggtctcatgctgtt
gcatgtgtcaatcaatttatcatcagcagaactcaagctcttatgttgcacatagatcct
tttattgagaatctttttgcactggctggtgatgaggagcctgaagtacgtaaaaatgtt
tgccgtgctctggtaatgttgctggaagttcgaatggatcgcctgctccctcatatgatt
agtatagttgagtacatgcttgaaaggacccaggaccaagatgaaaatgtggctttggag
gcttgtgagttttggctgactttggctgaacagccaatttgtaaagatgtgttatgtcgg
catcttactaaactgatacctgtgctggtaaatggtatgaaatattcagagattgatatt
attctgttgaagggggatgttgaagaagatgaagctattccagatagtgaacaggacata
agacctcgttttcatcgttctcggacagtggctcagcaacatgaagaagatggtattgaa
gatgatgatgatgatgatgatgaacttgatgatgatgatactatttctgactggaattta
aggaaatgttctgctgctgctctagatgttctagccaatgtatttcgtgatgaacttctg
ccacacatcttaccccttttgaaggaactgctcttccatcccgaatgggtagttaaagaa
tctggtatccttgttcttggagcaattgctgaaggctgcatgcagggtatgataccatat
cttcccgagctgatccctcaccttattcagtgcctctctgacaaaaaggctcttgtgcgt
tccattacatgctggactcttagtcgctatgcacactgggtagttagccaacccccagac
acatacttgaagccattaatgacagagttgctaaagcgtatcctggatagcaacaagaga
gtacaagaagctgcctgcagtgcctttgctactctagaagaggaggcttgtacagagctt
gttccttatcttgcgtatatacttgacactttggtcttcgcatttagtaaataccagcat
aaaaacctgctcattctttatgacgctataggaactctggcagattctgtaggacatcat
ctaaataaaccagaatacattcagatgctaatgcctccattaatccagaagtggaacatg
ttgaaggatgaagataaagatctcttccctttattagagtgcctgtcgtcagttgctact
gccttgcaatctggctttcttccatactgtgaacctgtgtaccagcgttgtgtaaatctg
gtgcagaagacccttgcacaagccatgttgcataatgttcatccagaccaacatgaggct
ccggataaagatttcatgattgtggctcttgatttactcagtggtttagctgaaggactt
ggaggcaacattgaacagctagtggctcgcagcaatatcctggaactaatgtaccagtgc
atgcaggataaaatgcctgaagtacggcagagttcttttgcattgttaggtgatctgaca
aaggcgtgttttcagcatgttaagccttgcattgctgaattaatgcccattttgggaacc
aacctaaacccagaattcatttctgtgtgcaacaatgccacttgggcaattggagaaatc
tccattcagatgggtatagagatgcagccttatattccaatggtgttgcaccagcttgta
gaaataattaacagacccaacacaccaaagacgttgttagagaatacagcaataacaatt
ggtcgtcttggttacgtttgtcctcaagaggtggcccccatgctacagcagtttataaga
ccctggtgcacctctctgcgaaacataagagacaatgaggaaaaggattcagcgttccgc
gggatatgtaccatgatctcggtcaaccccagtggagtagtccaagactttatttttttt
tgtgatgctgttgcttcgtggattagcccaaaagatgatctccgagacatgttctgtaag
attcttcatggatttaaaaatcaagttggggatgagaattggaggcgtttctctgaccag
tttcctcttcccttaaaagagcgccttgcagcttactatggagtttaa
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integrated database retrieval system
