Phalacrocorax carbo (great cormorant): 104052429
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Entry
104052429 CDS
T08596
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 9-like
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pcao03036
]
104052429
Chromosome and associated proteins [BR:
pcao03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
104052429
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
BRK
Chromo
Helicase_C
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
104052429
NCBI-ProteinID:
XP_009511991
LinkDB
All DBs
Position
Unknown
AA seq
2866 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQSGPVSLVDELNLGAEFEPLHIDSLNHVQDSQ
SQQKMSEFDQLNQYDSLKLHSVNQSFNSSADNVLSPHSQFSCSPIHPQNQSNGMFPDVAD
GSPMWGHQTATTVSNQNGSPFQQGHSQSMQQNKRFVAHHDFALFQANEPQHQCASLRSQE
SRNNTGQDALSEPKDFMEVNVSTSHRVSVNHPPPVSNTSTSQQPMSVQQFSQTASASVHF
CGNQEGNFDGQSPTITPCSVNNSQQFSSPYSYSNNHISTTSLLQSTTALSTSQQTHSISD
FTGSDAFTSQTGTKQEATEHMLNPNTPLNSNSFQMLHSAHPQGNFSSSKLSPVNINFPAS
AGSASQISHFTDPIESNGFTSLDENLLHQVDTHNEPFTGLDPDDLLQEDLLPQFDDSAFV
QDSTTHVLEHDLEEHHITPQQVTQSSNLVRAQSQSQIHPWHSTVSNQHLQDRSRLTLQGQ
PPSSKKTDGSGSYTKLQNTQVRAMSEKKQKKKADSESKQEKANRIISEAIAKAKERGERN
IPRVMSPENFPSASAEGKEEKKGRKVKSKPKDKESKKPKTGSSSKIKEKTKIGKLIITLG
KKQKRKNESSDELSDAKQTPQRPLKDDDSQKRRSNRQVKRKKYAEEGEGKQSEEEAKVSV
KIRNXFFAEQPLQLFVENPSEEDAAIVDKILSSRLIKKEISSGMTVETEEFFVKYKNYSY
LHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSLCE
DKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDQAKIEEFEQLQASRPDSRRLDRPPPNSW
KKIEQSREYKNGNQLREYQLEGLNWLLFNWYNRQNCILADEMGLGKTIQSITFLYEILLA
GIRGPFLIIAPLSTITNWEREFRTWTDLNVVVYHGSMISRQMIQQYEMYFRDSQGRIVRG
TYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLT
GTPLQNTVEELFXXXXXXXXXXXTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKK
LAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKCCNHPYL
IKGAEEKILGEFKETYSPSAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVR
CLDILEDYLIHKRYLYERIDGRVRXXXXXXXXSKPDSDRFVFLLCTRAGGLGINLTAADT
CIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQ
SMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQILQRRTKTITI
ESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISGRNSLVIDTPRIRK
QTRPFSATKDELAELSEVESEGDDKPKLRRPCDRSNGYGRTECFRVEKNLLVYGWGRWRE
ILSHGRFKRQLNEQDVEIICRALLAYCLVHYRGDEKIKSFIWDLITPTEDGQTRELQNHL
GLSAPVPRGRKGKKVKTQASTFDIHKAEWLRKYNPEHLLQDEGYKKHIKHHCNKVLLRVR
MLYYLKQEVIGNEFQKVFDGIDASEIDVWVPEPDHSEVPAEWWDADADKSLLIGVFKHGY
EKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYIDGDVEDPEYKPAPAMFKDDIEDDV
SSPGDLVIADGDGQMMEGDKIYWPTQSALTTRLRRLITAYQRTSKNRQAQQIQPAFPVQT
SMMQPPFEEAALNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPERGRFDWTKFRAM
ARLHKKTDESLEKYLYAFMSMCRRVCRLPSKEELVDPNIFIQPITEERASRTLYRIELLR
KVREQALRHPQLFERLKLCQPNPDLPVWWECGTHDRDLLIGAAKHGVSRTDYHILRDPEL
SFMSAQRNYNQNKVALSRTSTPLLHQYQMALSASPLTPQSRLSDPKVNAFEDAKAKSENM
KEDPQSSEEESMSTEETQTIMKSEPLSPKNGTPIQNIDHKPSAKTETDRRMVAARTEPLT
PNPASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSRSGSSSSSSSSC
SSASSSSSSSSSSSSSSSSSSSEESDSDEEEAQKREGTPHIKAYDEESVASLSTTQDETQ
DSFQMNNGTPNSSYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWPSARRSYDSNT
VASFYTTKLLDSPGAAADYSEPSAPTPPLAGVKEEYDQSPQMSKEGGLKLTFQKQGLSQK
RPFESEEGALGQQQYLARLRELQNASEISLVNFPKSLPESGTSSHLTASANGVVIDSQPV
VKKRRGRRKNVEGVDVLFINRNKQPNHVNPGINSCQVTAGINAALTYTQSQGMLDAESPV
PVINLKDGTRLAGDDAPKRKDLERWLKEHPGYVEDSGACIPRMQLHDGRPKQKRHRCRNP
NKLDVNSLTGEERVQLINRRNARKVGGAFAPPLKELCRFLKENPEYGVAPEWGEVVKQSG
FLPEGMFDRILTGPVVREEVSRRGRRPKSEIAKATAAAAAATAASVSVNPLLANGLLPGV
DLPSLQALQQNLQNLQSLQVTAGLMGMPAGLTAGGEAKNMAAMFPMLLSGMAGLPNLLGM
GGLLTKSTESISEEKKGSDSKEADIKKERTEDQNTDTGGENSVSSSPSTSSAAAAANPLS
LNPLLLSNILYPGMLLTPGLNLHIPALSQSNIFDVQNSESNDTGSAKPTEEKEENSRVRD
QEERGGTEPSSHNENSTDEGSEKADASSGSDSTSSSSEDSDSSDED
NT seq
8601 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaatctttttagtgagaccttagaa
ggtttgtcagatgatgcctttgttcaatctggacctgtttcacttgttgatgaattgaat
ttgggtgcagaatttgaacctttgcacatagactcattgaaccatgtgcaagattctcaa
agtcaacaaaagatgagtgagtttgatcagctgaatcagtatgattcactgaaacttcac
tcagtaaatcagtcttttaatagctcagctgacaatgtcttatcaccacactctcaattc
agttgttcaccaattcatccgcaaaaccagtctaatgggatgtttccagatgtggctgat
ggtagtcctatgtggggccatcaaactgccacaactgtttcaaatcaaaatgggtcaccc
tttcaacaaggacattctcagtctatgcagcaaaacaaaagatttgtagcacaccatgac
tttgccttatttcaggctaatgaaccgcagcatcagtgtgcctcgctacggtcgcaggaa
agcagaaacaacacagggcaagatgctctgagtgagccaaaagacttcatggaagttaac
gtttctacttctcacagagtcagtgttaaccacccacctccagtttctaatacatcaact
tcacagcagcctatgtctgttcaacagttttctcaaactgcaagtgcttcagtacatttt
tgtgggaatcaagaaggaaattttgatggacagtccccaactattactccatgttctgtc
aataatagccaacaattttcgtctccttattcgtactctaataaccacatttctactacc
agccttcttcagtctacaacagctctttctactagccagcagacgcactctatttctgac
ttcactggaagcgatgcctttacatctcaaacagggaccaagcaagaagcaaccgagcac
atgttgaatcctaatacacctttgaattcaaatagttttcaaatgttgcattctgcgcat
cctcagggcaactttagtagttcaaaactctctcctgtgaatattaattttccagcttct
gctggttctgcttctcagataagccatttcactgaccctatcgaaagcaacggttttaca
tccttagatgagaacttacttcatcaggttgatactcataatgaaccatttacagggctt
gacccggatgacctccttcaggaagaccttctgccacagtttgatgattctgcatttgtt
caggatagcacaactcatgttttggagcatgacctagaagaacaccatataaccccacag
caagtaacccagtcatccaatcttgttcgggcacagtctcaaagtcagatccatccttgg
cattctacagtttctaatcagcatttgcaagacagaagtcgtctaaccttacaaggacag
cctccttcctccaagaagactgatggttcaggatcatatactaagttgcagaatacccag
gtgagagcaatgtctgaaaagaagcagaagaaaaaagcagactcagaaagtaaacaagag
aaggcaaatcgcataatatctgaagcgattgcaaaagcaaaagagagaggagagagaaac
attccacgagtaatgagtcctgaaaacttccccagtgcgtcagccgaaggaaaagaagaa
aagaagggtagaaaagttaaatccaaaccaaaggacaaggagagcaaaaaaccgaaaact
ggttcctcgtccaaaattaaagagaaaacaaaaattggaaagctaatcatcacactaggg
aagaagcagaaaagaaaaaatgaatcttcagatgaattgtctgacgcgaagcagactccg
cagcggccattgaaagatgatgactcacagaagagaagatcaaatcgtcaagttaaaagg
aaaaaatatgctgaagaaggagaaggaaaacaatcagaagaagaagctaaagtttctgtg
aaaatcagaaacnttttttttgctgaacagcctttacagttatttgtggaaaatccaagt
gaagaagatgcagcaattgtagacaaaatcttatcctccaggttaataaagaaagaaata
tcttctgggatgacagtagaaacagaagagttttttgtaaaatacaagaactactcttat
ctccactgtgagtgggccacagaacaacagcttttaaaggataaaagaatacagcagaaa
ataaaacgattcaaattaaggcaagcacaaagagctcacttttttgcagatatggaagaa
gaaccttttaatcctgactatgttgaagtagatcgggtattagaagtatctctttgtgaa
gataaggacactggtgagcctgttatttactatttagtaaaatggtgttcgttgccatat
gaagacagtacgtgggaactgaaagaagatgtagatcaagcaaaaatagaagaatttgaa
caattgcaagcttccaggcctgactcaaggagactggaccgaccacctccaaactcctgg
aagaagatagaacagtccagggaatataaaaatggcaatcagctcagggaatatcaactg
gaaggacttaactggctcctattcaactggtacaacaggcaaaattgcattttagcggat
gaaatgggtcttggcaaaaccattcagtcaattacattcctctatgaaatcctcctggct
ggtataagaggaccttttctcatcatagctccgctttccaccataacgaactgggaaaga
gaatttcgcacgtggactgaccttaatgttgtagtgtatcatggaagtatgatcagcagg
cagatgattcagcagtatgaaatgtacttcagggactcccagggacgcattgttcgaggt
acctacagattccaagccattatcacaacttttgaaatgattcttggtgggtgtccagag
ttaaatgcaattgaatggcggtgtgttattatcgatgaagctcacagactgaagaacaaa
aattgcaaactcttggaaggactaaaattaatgaaccttgagcataaagtactgttaacg
ggtaccccactgcagaacacagtagaagaattatttannnnnnnnnnnnnnnnnnnnnnn
nnnnnnnntacattcatgcaagaattcggagaccttaaaacggaagaacaggttcagaaa
ctacaagctatcctgaaacccatgatgctcagacgattaaaggaagatgtagaaaaaaag
ctggctcccaaggaggaaactataattgaagtagaactaactaatattcagaagaaatat
taccgagcaatcttggagaaaaattttgctttcttatccaaaggcgcaggtcaagcaaat
gtacccaatctggttaacacgatgatggaactcagaaagtgttgtaatcacccttatctc
atcaaaggtgctgaagagaaaatccttggagagtttaaagaaacttatagcccaagtgct
cctgactttcatctgcaagcaatgatccagtctgctggtaaattggttcttattgataaa
cttcttccaaaaatgaaagcaggaggccacaaggtccttatcttctctcaaatggtgcgc
tgccttgatattttggaggattaccttatacataaaagatacttatatgaacgaattgat
gggcgagtacgnnnnnnnnnnnnnnnnnnnnnnnnnagcaaaccagattccgatcgcttt
gtcttccttctgtgcaccagagctggtggtttgggcattaatttgacagcagcagatacc
tgtataatttttgattctgactggaatcctcaaaatgatctgcaggctcaagcccgttgt
cacaggattggtcagaacaaagccgtgaaggtctacagactgataacgcgtaactcctat
gagagagagatgtttgacagagcaagtctgaaactgggactggataaggctgtcttacag
agtatgagtggaagagaaaacagtgtcggtggtattcaacaactctcaaaaaaagaaata
gaagacttgcttcgaagaggtgcatatggtgccattatggatgaggaagatgaaggctct
aaattctgtgaggaagacattgaccaaattttgcagcgtcgtactaaaactatcacaatt
gaatcagaaggaaggggctccacgtttgctaaggctagttttgttgcatctggaaacagg
actgatatttcactagatgatcccaacttctggcagaaatgggccaaaaaagcagaaata
gatatagatgctatcagtggtagaaacagcctggttattgataccccaagaattaggaaa
caaacacggccctttagtgctacaaaagatgagctggctgagttgtctgaggtggagagc
gagggtgatgataaaccaaaactccgcaggccttgtgaccgctccaatggatatggaaga
acagagtgctttcgggtggaaaaaaacttgctggtctatgggtggggtcgatggagagaa
attttgtcacatggtcgcttcaagagacagctgaatgaacaggatgtggagataatttgc
cgagctctattagcctattgtcttgttcactacagaggggatgagaaaataaaaagtttt
atatgggatctcattaccccaacagaggatggccaaacaagagagttacagaatcacctt
ggtttatcagcccctgtgcctagaggaagaaaaggaaaaaaagtgaagacccaggctagc
actttcgatatacacaaagcagaatggcttcgaaaatacaatccagaacatctgttgcaa
gatgaaggatacaaaaagcacataaaacaccactgcaacaaggtcttgcttcgagtaaga
atgctgtattacttaaaacaagaagtcattggtaatgaattccaaaaggtgtttgatgga
attgatgccagtgaaattgatgtttgggtccctgagccagatcactctgaagttcctgcc
gagtggtgggatgcagatgcagataaatcccttctaattggagtttttaaacatggttat
gagaaatacaacactattagagcagacccagcactgtgcttcttggaaagggttggcaag
ccagatgaaaaagcagttgcagctgaacagagagcaaatgattatattgatggggatgta
gaagatccagaatataaaccagcaccagcaatgtttaaagatgacatagaggatgatgtt
tcatccccaggtgatctagtaatagcagatggagatggacaaatgatggaaggagacaaa
atctattggccaactcagtctgccttaacaacacgtcttcgccgcctaataacagcttat
caacgaacaagcaaaaataggcaggcccagcagatccagccagcgttcccagtacaaact
agtatgatgcagcctccatttgaagaagctgctctaaatccaaagatggctgctaagatt
gaaagacagcaaaggtggacaagaagagaagaagctgacttttacagagttgtgtccaca
tttggagtggtgtttgatcctgaaaggggacgatttgattggaccaaatttagagcaatg
gctagactacataagaaaactgatgagagcttagagaagtacttgtatgcatttatgtca
atgtgccggagagtctgtcgtctcccctcaaaagaagaactcgtagacccaaacattttt
atccaaccaattacagaggagcgtgcttctcggactttgtatcgcattgaacttctaagg
aaagtgcgagaacaggctcttagacacccacagttgtttgaacgactaaagctatgccag
ccaaacccagacttacctgtctggtgggagtgtgggactcatgacagggatttacttatt
ggagctgctaaacatggagtcagcaggacagattatcatattcttcgtgatcctgaactc
tcatttatgtctgcccagaggaactataatcaaaataaagtggcactctcaaggacttct
actccactcttgcatcagtaccagatggcattatctgcttctcctcttacacctcagtca
agattgtcagatcctaaagtgaatgcttttgaggatgcaaaagctaaaagtgaaaatatg
aaagaggaccctcagtcttctgaagaggaatctatgtctacagaggagacacaaacaata
atgaaatctgaacctctgagtccaaaaaatggcacaccaatacaaaatatagaccacaaa
cctagcgcgaagactgaaacagacaggcgcatggtggcagcaaggacagagcctctaact
ccaaacccagcttccaaaaaacagagagtcagcaaaaggggatctgactctagctctgac
tcagactctgactcagatagatcatcctgttcttccaggtcatcatcttcatcctcttcg
tcttcctcatcttgttcacactctcgatcaggttctagctcttcatcatcctcatcttgt
tcttcagcatcttcatcctcatcatcatcctcctcctcatcatcatcgtcatcatcatca
tcgtctgaagagagtgatagtgatgaagaggaggcacaaaaacgtgaaggaaccccacat
ataaaagcatatgatgaagagagtgtagcctctctgagtacaacacaagatgaaacacaa
gacagtttccagatgaacaatgggacaccaaattccagttatctcctacaaggtggatac
atgttggctgcatcctactggccaaaggatcgagttatgattaatcgacttgatagtatt
tgtcaaacagtgttgaaaggtaaatggccttcagcaagaaggagctatgacagcaatacg
gtggcatctttctacacaaccaaacttctggatagcccaggtgcagctgcagattacagt
gagcccagcgcaccaacaccccctcttgcaggtgttaaagaagaatatgatcaatcacca
cagatgtcaaaggaaggtggtttgaaattgacttttcagaagcagggactgtctcagaaa
aggccatttgaaagcgaggaaggtgcacttggacagcagcaatacctggctcggctacgt
gaactccagaatgcttcagaaatcagccttgtcaacttcccaaaatcacttcctgaatca
ggtacttccagtcatttaacagccagtgccaatggagtcgtcattgacagtcagcctgta
gtcaaaaagagaagaggaagaaggaagaatgtggagggagttgatgtcctctttataaat
agaaataaacagcctaatcatgttaatccaggtattaactcctgtcaagttactgcagga
ataaacgcagcactcacttacacgcagtcccaaggcatgcttgatgcagagagtccagtt
cctgttattaacctaaaagatggaacgaggcttgcaggtgatgatgcccccaaaagaaaa
gatttagaaaggtggcttaaagaacatcctggatatgttgaagattcaggagcttgtatt
cctaggatgcagctgcacgatgggaggcccaaacaaaaaagacaccgttgtcgaaaccct
aataaactggacgttaatagtttgactggtgaagaacgcgttcagctcataaatagaaga
aacgcaagaaaggtggggggtgcgtttgctccccctttgaaggaattgtgcaggttcttg
aaagaaaatccagagtatggagtggctcctgaatggggagaagttgtaaaacagtctgga
tttcttccagaaggtatgtttgaccgtattcttactggacctgttgtgcgggaagaagta
agccggagaggaaggcgccccaaaagcgagattgcaaaggcaacagcagctgcagcagct
gccaccgctgcaagtgtatcagttaaccccctgctagctaacggattgcttccaggagtc
gatctgcctagtcttcaggccttacaacaaaacctgcaaaacctgcagtcactgcaagta
acagcaggattaatgggaatgccagctggcttaactgctggaggagaagcgaagaacatg
gctgccatgttccccatgctgctgtcagggatggctggattaccaaacttgctgggcatg
ggaggacttctaacaaagtctacagaatctatttcagaggaaaaaaagggaagcgattcg
aaggaggcagatataaagaaagaaaggacagaagaccaaaacacagacactggtggtgaa
aactctgtttcaagttctccttcaacatcctctgctgctgcagctgccaatcctctctct
cttaacccattacttctgtccaacatactttacccagggatgcttctcactccaggcctt
aatcttcatatcccagctttgtctcagtctaatatttttgatgtacagaacagtgaaagc
aatgacacaggctcagccaagcccacagaagaaaaggaggaaaattctagggttagagat
caggaagaaagagggggaacagagccaagctctcacaatgaaaacagcacagatgagggt
tcagagaaagcagatgcttcatctggatctgatagtacatcgtcttcatctgaggattca
gattctagtgatgaagactga
DBGET
integrated database retrieval system
