KEGG   Phalacrocorax carbo (great cormorant): 104052871
Entry
104052871         CDS       T08596                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pcao  Phalacrocorax carbo (great cormorant)
Pathway
pcao03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcao00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104052871 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pcao03041]
    104052871 (SNRNP40)
Spliceosome [BR:pcao03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    104052871 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    104052871 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_HPS5 Cytochrom_D1 WDR54 WD40_like WD_LRWD1 PROPPIN Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 104052871
NCBI-ProteinID: XP_009512511
LinkDB
Position
Unknown
AA seq 310 aa
GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGNTLASAGFDRLILLWNVYGDCDNYATLKG
HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV
CTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL
TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKN
LLRCSWSPDGSKIAGGSADRFVYVWDTTSRRILYKLPGHAGSVNELAFHPEEPIILSASS
DKRLYMGEIQ
NT seq 933 nt   +upstreamnt  +downstreamnt
ggcccgccacgctgctcctccctgcaggcccccatcatgctgctctcggggcacgaagga
gaggtgtactgctgcaagttccaccccaacggcaacacccttgcctccgctggctttgac
aggctcatcttgctgtggaacgtctacggggactgcgataactacgccaccctgaaggga
cacagcggggcggttatggagctgcactataacacagacggcagcatgctcttctcagca
tccacagacaaaaccgtggctgtgtgggatagtgagactggagagagagtgaagagactg
aagggccatacctcattcgttaactcctgttacccggcgaggcgaggaccccagcttgtc
tgtacaggcagtgatgatgggacagtgaagctgtgggatatcaggaaaaaagctgctgtc
cagacatttcagaacacgtaccaggtcttggctgtaactttcaatgacaccagcgatcag
atcatatccggaggcatcgacaacgatattaaggtgtgggaccttcgccagaacaagctc
acttacacgatgagagggcacgcggactcggtgacaggcctcagtctgagttcagaaggc
tcctacctgctctccaacgcgatggacaacacagttcgcatctgggatgtgcgaccgttt
gcccctaaagagagatgtgtaaagattttccaggggaacgtgcataattttgaaaagaat
cttctgaggtgctcttggtccccggatgggagtaaaatagcagggggatcggccgacagg
tttgtctacgtgtgggacaccacatccaggaggattttgtacaagctgccaggccacgct
gggtcggtgaacgaactggctttccatccagaggaacccattatactctccgcatccagc
gacaaaagactgtatatgggagagatccagtga

DBGET integrated database retrieval system