Phalacrocorax carbo (great cormorant): 104052890
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Entry
104052890 CDS
T08596
Name
(RefSeq) LOW QUALITY PROTEIN: probable ubiquitin carboxyl-terminal hydrolase FAF-X
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pcao01002
]
104052890
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pcao04121
]
104052890
Enzymes [BR:
pcao01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
104052890
Peptidases and inhibitors [BR:
pcao01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
104052890
Ubiquitin system [BR:
pcao04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
104052890
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3517
UCH
UCH_UBL1
UCH_1
Vps23_core
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
104052890
NCBI-ProteinID:
XP_009512534
LinkDB
All DBs
Position
Unknown
AA seq
1789 aa
AA seq
DB search
CASSASVPELPLRKAATGLCFTAVVVTVNVSVADCYLQMLQTFYSGTVVIHEDFIQSCFD
RLKASYDTLCVLDGDKDSINCARQEAIRMVRVLTVLREYINECDSDYHEERTILPMSRAF
RGKHITLVVRFPNQGRQVEDLDIWSHTNDTIGQVRRCILNRIKANSAHTKVELFIGGELV
DPADDRKLIGQLNLKDKTLITAKLTQINSNMPSSPDSSSDSSTGSPGNHGNHYSDGPNPE
VESCLPGVIMSLHPRYISFLWQVADLGSSLNMPPLRDGARVLMKLMPPDNTTVEKLRAIC
LDHAKLGESSLSPSLDSLFFGPSASQVLYLTEVVYALLMPASAPLGEDASDFQYNFLKSG
GLPLVLSMLTRNNFLPNADMETRRGAYLNALKIAKLLLTAIGYGHVRAVAEACQPVVEGT
STISPINQATHDQAVVLQNALQNIPNPTSECMLRNVAIRLAQQISDEASKYIPDICVIRA
VQKIVWASGCGSVQLVFSSNEEISKIYEKTNAGNEPDMEDEQVCCEALEVMTLCFALIPT
ALDALSKEKAWQTFIIDLLLHCHSKTVRQMAQEQFFLMATRCCMGQRPLLFFITLLFTVL
GSTARERAKHSGDYFTLLRHLLNYAYNSNINVPNAEVLLNNEIDWLKRIRDEVKRTGETG
VEETILEGHLGVTKELLAFQTPEKKYHIGCEKGGANLIKELIDDFIFPASNVYLQYXXXX
XAEQAIPVCSSPATINAGFELLVALAVGCVRNLKQIVDTLTEMYYIGTAITTCEALTEWE
YLPPVGPRPPKGFVGLKNAGATCYMNSVIQQLYMIPAIRNGILAIEGTGSDVDDDMSGDE
KQDNESNVDPRDDVFGYPHQYEDKPALSKTEDRKEYNIGVLRHLQVIFGHLAASRLQYYV
PRGFWKQFRLWGEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKI
CQGCPHRYECEESFTTLNVDIRNHQNLLDSLEQYVKGDLLEGANAYHCEKCNKKVDTVKR
LLIKKLPPVLAIQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDDVNPE
NQIIQNEQSENEHSGSTKYRLVGVLVHSGQASGGHYYSYIIQRNGGDGEKNRWYKFDDGD
VTECKMDDDEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDTIDKDNE
LIKYISELAITTKPHQIKMPSAIERSVRKQNVQFMHNRMQYSLEYFQFIKKLLTCNSVYL
NPPPGQDHLLPEAEEITMISIQLAARFLFTTGFHTKKIVRGPASDWYDALCILLRHSKNV
RFWFAHNVLFNVSNRFSEYLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPFASPGPSS
QAYDNLSLSDHLLRAVLNLLRREVSEHGRHLQQYFNLFVMYANLGVAEKTQLLKLNVPAT
FMLVALDEGPGPPIKYQYAELGKLYTVVSQLIRCCNVSSRMQSSINGNPPLANPYGDPNL
SQPIMALQQNVADILFVRTSYVKKIIEDCSNSEETIKLLRFCCWENPQFSSTVLSELLWQ
VAYSYTYELRPYLDLLLQILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRA
YQCIKCMVALFSNCPVAYQILQSNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSP
PIQSNETSNGYFLERSHSARMTLAKACELCPEEEPDDPDAPDEHESSPPEDAPLYPHSPG
SQYQQNNHVHGQPYTGPAAHHMNNPQRTGQRAQENYEGSEEVSPPQAKD
NT seq
5370 nt
NT seq
+upstream
nt +downstream
nt
tgtgctagtagcgcctcggttcctgagctgcctctaaggaaagcggctactggactgtgt
tttactgccgtagttgtgactgttaatgtttctgttgcagactgctacctgcagatgctg
cagactttttacagtggtactgtagtgattcatgaagactttattcagtcctgttttgat
cgtctaaaagcctcctatgatacgttatgtgtgttggatggagataaagacagtatcaat
tgtgcaagacaagaagcaatacgaatggtgagagtgttgactgttttaagagagtacata
aatgaatgtgacagtgattaccacgaagagagaactattctacctatgtcaagagctttc
cgtggtaaacatatcacactggtagttcggtttccaaaccaaggccgacaggtggaagat
ttggatatttggtctcatacaaatgacacaattggccaagtacggcgctgtattctcaat
cgtattaaagccaacagtgcacacacaaaagttgaactgttcattggtggtgagctggtg
gaccctgcagatgacagaaaattaattgggcagttgaatctcaaagataaaacgctaatt
acagctaagcttacacagataaattctaatatgccctcaagtccagatagttcttctgac
tcttcaactggttctccgggcaaccatggcaatcactacagtgatggtccaaatccagaa
gttgaaagctgtttgcctggagtgatcatgtcactgcatcctcgatacatctcttttctt
tggcaagttgcagacttgggcagtagcctaaacatgccacctcttagagatggagcacga
gttcttatgaagctcatgccaccagataacactacggttgagaaactaagagctatttgt
ttagatcatgcaaagcttggggaaagcagccttagtccatcccttgattctctgttcttt
ggtccttctgcctcacaagtgctgtatctaacagaggtagtttatgccttgttaatgcct
gccagcgcacctctgggagaagatgccagtgacttccagtacaacttcttaaaaagtggt
ggtttgcctcttgtattgagcatgctgactagaaataacttcctgccaaatgcagatatg
gaaactcgaaggggtgcctatcttaatgctctaaaaatagccaaattattgctaacagca
attggatatggccatgttcgagctgtggcagaagcttgtcagcccgttgtggaaggcaca
agtacaatttcaccgataaaccaggctacgcatgatcaggcagtggtgctacaaaatgcc
ctacaaaacattcctaatccaacctcagaatgcatgctaagaaatgtagcaatacgtctt
gcacagcaaatatctgatgaggcttcaaaatacatccctgatatctgtgttattagggca
gtacaaaaaattgtttgggcatcaggttgtgggtcagttcagctggttttcagctcgaat
gaggaaatcagtaaaatctatgaaaagacaaatgcaggaaatgaaccagacatggaagat
gaacaagtttgctgtgaagcattggaggtgatgaccctgtgctttgctttgattccaacg
gcactggatgcactcagtaaagaaaaagcatggcagacgtttatcatcgatttgctattg
cactgtcacagcaaaactgttcgtcagatggcacaggagcaattctttttaatggctacc
aggtgttgcatgggacagagacccctccttttcttcattaccttgctgtttactgttcta
gggagtactgcaagagagagagccaagcattctggagactacttcactctcttaagacat
cttcttaactatgcttacaacagtaatattaatgtacccaatgctgaagttcttctcaat
aatgaaattgactggcttaagaggattagggatgaagtaaaaagaacaggggaaacaggt
gttgaggaaactatcttagagggtcaccttggagtaacaaaagagttgttagcattccag
acacctgagaagaaataccatattggttgtgaaaaaggaggtgctaatctcattaaagaa
ttgatagatgatttcatctttccggcatccaatgtttatctacaatacnnannnnnnnnn
nntgctgagcaggccataccagtctgtagttcaccagctactattaatgctggctttgag
ctactagttgcactagcagttggatgtgtccgaaatctcaaacagatagtagacaccttg
actgaaatgtattacataggtacagcaatcactacttgtgaagcgcttacagaatgggag
tatctaccacctgttgggcctcgaccaccaaagggatttgtaggactaaaaaatgctggt
gccacttgttacatgaattctgtcattcagcagctgtatatgattccagccatcaggaat
gggattcttgcaattgaaggcacaggcagtgatgtagatgatgacatgtctggggatgaa
aagcaggacaatgagagcaatgttgacccacgagatgacgtgtttggttatccacatcag
tatgaagacaaaccagcactgagtaaaacagaagatagaaaagagtacaatattggagtt
ctgaggcatctccaagtaatttttggtcatttagcagcttccaggctacagtactatgta
ccaagagggttttggaagcaatttagactttggggtgaacctgtaaatctacgtgaacag
catgatgctttagaattttttaattccttggtggacagcctagatgaagctttaaaagct
ttgggccatccagcaatgttaagtaaagttttaggagggtcctttgctgatcagaagatt
tgtcaaggatgcccacatcggtacgaatgcgaggaatccttcacaactctgaatgtagat
ataagaaatcaccaaaaccttcttgattctttggaacagtatgtcaaaggagatttattg
gaaggtgcaaatgcatatcattgtgaaaaatgcaacaagaaggttgatacagtgaaacgc
ttgttgattaagaagttgcctccagttcttgcaatccagttgaaacgatttgactatgac
tgggaaagggaatgtgcaatcaaattcaacgattattttgaatttccacgagagctggac
atggagccttacacagtggcaggtgtggctaaattggaaggagatgatgtaaatcctgaa
aatcagataatacaaaatgaacagtcagaaaatgaacactctgggagcacgaaatacagg
cttgttggtgtacttgtacacagtggccaggccagtggtggacactattactcttatatt
atccagaggaatggtggagatggtgagaaaaatcggtggtataaatttgatgacggagat
gtgaccgagtgtaaaatggatgatgatgaagaaatgaaaaaccagtgttttggtggagaa
tacatgggggaagtgtttgatcatatgatgaagcgcatgtcctacagacgacagaagaga
tggtggaatgcttacattcttttttatgaacgtatggacacaatagacaaagacaatgaa
ctaataaaatatatttcagaactcgctatcaccactaaaccccatcagattaaaatgcca
tcagccattgaacgaagcgtacggaagcagaatgtgcagttcatgcataatcgtatgcag
tacagcctagaatatttccagttcataaagaagttgcttacgtgtaatagtgtctactta
aatcctcctccaggacaagatcatctgttgcctgaagcagaagaaataactatgattagt
attcagcttgctgctagatttctcttcaccacaggatttcatacaaagaaaatagtccgt
ggccctgctagtgattggtatgatgcattatgcatccttcttcgtcacagcaagaatgta
cgcttttggtttgcacacaacgtcctttttaatgtttcaaaccgcttctctgagtatctt
ttggaatgccctagtgctgaagtgaggggtgcatttgcaaaacttatagtatttattgca
catttttcattgcaagacggaccatgtccttcaccttttgcatctcctggaccttccagt
caggcttatgataacttaagtttaagtgatcacttactgagagcggtactaaatcttcta
agaagggaagtatccgaacatgggcgccatttgcagcagtatttcaatctgtttgtgatg
tatgccaatctaggtgtagcagagaagacacaacttctgaaactaaatgttcctgcaacc
ttcatgcttgtcgctctggatgaaggtccaggtcctccaattaaataccagtatgctgaa
ctggggaagctatacactgttgtgtcacaactgatccgttgttgcaatgtgtcatcacgg
atgcagtcttctatcaacggtaatcccccacttgccaacccttatggtgatcctaattta
tctcaacctataatggcacttcagcagaacgtagcagacattttgtttgtgagaactagt
tatgtgaagaaaattattgaagattgcagcaattctgaagagaccatcaaattacttcgt
ttctgctgttgggagaatcctcagttctcttccactgtcctcagtgaacttctttggcag
gttgcatattcatatacatatgagcttcgaccgtatttggatctgcttctgcaaatccta
ttaattgaggactcttggcaaactcacaggattcacaatgcacttaagggaatcccggat
gacagggatggactatttgacaccattcagcgctctaagaatcattatcagaaaagagct
taccagtgtataaagtgcatggtagctctcttcagcaactgtcctgtagcttaccagatc
cttcagagcaatggagatttgaagagaaaatggacctgggcagtagaatggcttggagat
gagcttgagcgtagaccatacactggcaatccccagtatacctataataactggtctcca
ccaatacaaagcaatgaaacatcaaatggctacttcctagagagatcgcacagtgctaga
atgacccttgcaaaagcttgtgagctctgcccagaggaggaaccagatgatcctgatgca
ccagatgaacatgagtcttctccgcctgaagatgccccactgtatccccattcacctggt
tcccagtatcaacagaataaccacgtgcatggacagccatatacaggcccggcagcacat
catatgaacaaccctcagcgaactggccaacgagcacaagaaaattacgaaggcagtgaa
gaagtttccccgcctcaggcaaaagattag
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integrated database retrieval system
