Phalacrocorax carbo (great cormorant): 104052910
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Entry
104052910 CDS
T08596
Symbol
CIITA
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
104052910 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pcao01001
]
104052910 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pcao04054
]
104052910 (CIITA)
Enzymes [BR:
pcao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
104052910 (CIITA)
Protein kinases [BR:
pcao01001
]
Serine/threonine kinases: Other
TAF1 family
104052910 (CIITA)
Pattern recognition receptors [BR:
pcao04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
104052910 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
Motif
Other DBs
NCBI-GeneID:
104052910
NCBI-ProteinID:
XP_009512560
LinkDB
All DBs
Position
Unknown
AA seq
1089 aa
AA seq
DB search
FRFCSDLLQTSSDAGMNLFKEILPRVRKILSTATTSDDHALLNLMLKEDVISKEYHQALL
HEKDREDLARKISLTFVEKWDLYLNTLVPLCCLNLYGSKPQNMADKEPTGSKYISDSKRQ
IMDSAFVSENGYLDLLHSDIDPLHLYTLLDPKSSGNEEGDFSADPEVDISNCDQFNNMDF
LYTMENGENGDELYFCSNTIEAYARIAELADYVLKDQQEKQVEDTFAGNLILDEMAAENT
EKFTDIKMQKCHKRTFLGCAESCSDASEPKYKKIVEVPAVSSGNGSFLAMPLNSHPANST
SLINQHMSFSVPATNALERSFVIPGSSAPLIPECLPVGMKGSQENTGFADPPQQILNFVL
GNGTSDVIIYPVLTSSVESLISPSFPVGLCGLEMFKELRVPVIPPEEPLKRPKPVEAFCT
SLMDYFRDVCKSVAMEREVALDHLFIDGTLVQSQIETKTGKNSVKAMEKGLVTCSLQGKE
KATLKRSQIFQVLGGKDLETKVIVVLGKAXXXXXXXXXXXXWSNGEFSQFEFVFWYDCKQ
ISLPEKRYSLKELLLDFFVKPQEGSKDIFEYILQNPAKVLLVFDGFEGLHDHENFPRCSA
RQPEKDLCSIKELLSGLIQRKILNGCTLLLTARPKDKMYQYVSKVDKTIEIVGFSHQQRE
LYITKYFEGLPYCDNALKLIRECEYLFSHCYSPLMCRFVCFLCETVLEMGDKSLPSTLTT
VFLKFVRQKIIPMQTDVTAMQNQECLAMLARIAWYLGEKHQSAMKSDHLPSKEVKEFALK
YGFFLPFAFPRPSDSGEEEFGSTFSDFVIQNFLGALHLMLAEDIKDKSLTKYLSFPSKKK
KPYNWSDLVPRFLAGLLFLQDDSYFCSLSNKDVKQSMKKQKTLLKYFKRLQINELCPERL
LELLHCIYETQSNYLLQHVALRLKPDLSFLGILLTPPDVHVLHSILKRSRKEFSLDLRNS
SIDMQGLKDLVGLKNVASFRASLSDTVRLWKSLEQTKDYELLRASTEKFVLDPFKAKTMK
DVSDLSDLVEMQEKMISCVQDASGCGNYEIPAIKNLRKLEFALGPVCGLQGFQKLVEILA
AFPSLQHLE
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
ttcagattttgctcagacctccttcaaacgtcttcagatgcaggtatgaatctctttaag
gagatcctgcctagagtaaggaagattctttcaactgctacaacttctgatgaccatgca
ttgcttaacctcatgctgaaagaagatgtgatatccaaggagtaccatcaagccttgctc
cacgaaaaagacagggaggaccttgcaaggaagatatctctgacatttgtggaaaaatgg
gacctgtacttgaacaccttggttcccctctgttgtctaaacctctatggcagtaagcct
caaaacatggcagataaggagccaacaggaagcaagtacatttctgacagcaagagacaa
atcatggattcagcatttgtgtctgaaaatggctatcttgatttgctgcacagtgatatc
gatccattgcatctgtatactcttcttgatcctaaatcatctggaaatgaagaaggtgac
ttctctgcagatcctgaagttgatatcagcaactgtgatcagtttaataatatggatttc
ctgtatacgatggaaaatggtgaaaatggggatgaattgtatttctgttccaacaccata
gaagcttatgctagaatagctgaattagcagactatgtgctcaaagatcagcaggagaag
caggtggaagacacttttgcagggaaccttattttggatgaaatggctgctgaaaacact
gagaaatttactgacataaagatgcagaaatgtcacaaacgaaccttcttaggctgtgca
gagagttgctctgatgcttcagaacccaagtacaagaaaattgtggaagtccctgcagtg
tcttcagggaatggcagtttcttagctatgcctctcaacagccatccagctaactccacc
tcattaattaaccagcacatgtccttttctgttcctgctaccaatgcattggaaagaagt
tttgtaattcctggatcttcagcacctttgattccagagtgtctacctgttggcatgaaa
gggagccaagagaatacaggctttgcagatcctcctcagcagatccttaactttgttctt
ggaaatggcacatctgatgttataatatatccagtgttgacttcttccgtggaatcattg
atatccccaagttttccagttggtttatgtggtttagaaatgttcaaagaactccgagtt
cccgtcatcccccctgaagaacctctcaaaagaccaaagccagtggaagctttctgtaca
tcacttatggattatttccgagacgtgtgcaaatcagtggccatggagcgtgaagtagct
cttgatcacctgtttattgatgggacacttgttcaaagccaaattgaaaccaagactggg
aaaaatagtgtaaaagcaatggaaaaggggctggtaacttgcagtctgcaagggaaggaa
aaggcaacccttaaaagaagtcaaatatttcaagtcctgggaggtaaagacttagagact
aaagtgattgtggtgctaggaaaagcanngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nactggtccaatggagagttctctcaatttgaatttgtattttggtatgactgcaaacaa
ataagcttgcctgagaagcgatacagcttgaaggaactgcttcttgatttttttgtgaaa
cctcaagaaggaagcaaagacatctttgagtatatattgcaaaatcctgctaaagtcctt
ctggtttttgatggttttgaagggttgcacgatcatgagaattttcctcgttgctcggcc
aggcagcctgaaaaagacttgtgtagtataaaggagctgctttcaggactcatccaaaga
aagatactcaatggctgtactttattacttacagcaagaccaaaagacaagatgtaccag
tatgtgtccaaagtggataagactattgaaatagtaggattttctcatcagcagagagaa
ttgtacataaccaaatacttcgaaggattaccctactgtgataatgcactgaaattaatc
agagagtgtgagtacttgttcagtcattgttacagccctcttatgtgtagatttgtttgt
tttctctgtgagacggtacttgaaatgggagacaaaagccttccttcaactcttactaca
gtcttcctgaaatttgttcggcaaaagataatacctatgcaaacagatgttacagccatg
caaaatcaagagtgtcttgctatgctagcccgtatagcctggtatcttggagaaaagcac
caaagtgccatgaaaagtgatcatcttccttctaaggaagttaaagaatttgctttgaaa
tatggatttttcctgccatttgcatttcccagaccttcagatagtggagaagaggaattt
gggagcacattctctgattttgtcattcagaattttttgggtgcgcttcaccttatgtta
gcagaagacatcaaggataaaagtctaacaaagtacctgtcttttccatccaagaagaaa
aaaccttataactggtcagatttagtgcctcgatttctagctggattgttgttcctccag
gatgactcctacttctgctccctttcaaataaggatgtaaaacaatccatgaagaaacag
aaaacactcttgaaatattttaaaaggcttcaaataaatgagctctgtccagagaggtta
ctcgagcttttgcattgtatttatgaaacacaaagcaattatcttttgcagcatgtggcc
ttaaggctcaagccagatctgtcttttctgggcatacttctcacaccacctgatgtccat
gtactgcactctattttaaaaaggtcaagaaaagagttttccttggatttgagaaacagc
agcattgacatgcaagggctaaaagacttggttggcctaaagaatgtggcatcgttcagg
gcctccctcagtgatacagtcaggctctggaaatctttagaacaaacaaaagactacgaa
ctgctgagagcatcaactgagaaatttgttcttgatccctttaaggcaaagacaatgaag
gatgtcagtgacctttcagaccttgtagagatgcaggagaagatgatcagctgtgtgcaa
gatgcatctggttgtggcaactatgaaattcctgctatcaaaaacctcagaaaactagaa
tttgctctgggtccagtatgtggcctacagggattccaaaaactcgtggaaatccttgca
gcatttccttcacttcagcatttagagtga
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integrated database retrieval system
